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  1. IGB
  2. IGBF-877

Opening a graph track from the Available Data pane causes an exception

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Description

          This exception was seen when trying to open a graph track from the Available Data pane:

          13:06:56.663 ERROR c.a.genometry.thread.CThreadWorker - com.affymetrix.genoviz.glyph.FillRectGlyph cannot be cast to com.affymetrix.genoviz.glyph.EfficientLabelledGlyph
          java.lang.ClassCastException: com.affymetrix.genoviz.glyph.FillRectGlyph cannot be cast to com.affymetrix.genoviz.glyph.EfficientLabelledGlyph
          at com.affymetrix.igb.view.layout.FasterExpandPacker.pack(FasterExpandPacker.java:144) ~[na:na]
          at com.affymetrix.igb.view.layout.GraphFasterExpandPacker.pack(GraphFasterExpandPacker.java:25) ~[na:na]
          at com.affymetrix.genoviz.bioviews.Glyph.pack(Glyph.java:710) ~[na:na]
          at com.affymetrix.igb.view.factories.AbstractTierGlyph.pack(AbstractTierGlyph.java:660) ~[na:na]
          at com.affymetrix.igb.view.factories.TransformTierGlyph.pack(TransformTierGlyph.java:44) ~[na:na]
          at com.affymetrix.igb.glyph.DefaultTierGlyph.pack(DefaultTierGlyph.java:183) ~[na:na]
          at com.affymetrix.igb.view.TrackView.addTierFor(TrackView.java:272) ~[na:na]
          at com.affymetrix.igb.view.TrackView.addEmptyTierFor(TrackView.java:231) ~[na:na]
          at com.affymetrix.igb.view.load.GeneralLoadView$3.runInBackground(GeneralLoadView.java:549) ~[na:na]
          at com.affymetrix.genometry.thread.CThreadWorker.doInBackground(CThreadWorker.java:73) ~[na:na]
          at javax.swing.SwingWorker$1.call(Unknown Source) [na:1.8.0_45]
          at java.util.concurrent.FutureTask.run(Unknown Source) [na:1.8.0_45]
          at javax.swing.SwingWorker.run(Unknown Source) [na:1.8.0_45]
          at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) [na:1.8.0_45]
          at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) [na:1.8.0_45]
          at java.lang.Thread.run(Unknown Source) [na:1.8.0_45]

            Attachments

              Activity

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              mason Mason Meyer (Inactive) created issue -
              mason Mason Meyer (Inactive) made changes -
              Field Original Value New Value
              Epic Link IGBF-439 [ 15497 ]
              mason Mason Meyer (Inactive) made changes -
              Rank Ranked higher
              mason Mason Meyer (Inactive) made changes -
              Status Open [ 1 ] Testing In Progress [ 10003 ]
              mason Mason Meyer (Inactive) made changes -
              Assignee Tarun Mall [ tmall ] Mason Meyer [ mason ]
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              Permalink
              mason Mason Meyer (Inactive) added a comment -

              To test this issue I verified that graph tracks could be opened from the Available Data pane and that there was no exception generated.

              Since this issue is resolved it will now be closed.

              Show
              mason Mason Meyer (Inactive) added a comment - To test this issue I verified that graph tracks could be opened from the Available Data pane and that there was no exception generated. Since this issue is resolved it will now be closed.
              mason Mason Meyer (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Testing In Progress [ 10003 ] Closed [ 6 ]
              jeckstein John Eckstein (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Closed [ 6 ] Open [ 1 ]
              jeckstein John Eckstein (Inactive) made changes -
              Labels Track_View
              jeckstein John Eckstein (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Open [ 1 ] Closed [ 6 ]
              ann.loraine Ann Loraine made changes -
              Workflow Loraine Lab Workflow [ 16287 ] Fall 2019 Workflow Update [ 19616 ]
              ann.loraine Ann Loraine made changes -
              Workflow Fall 2019 Workflow Update [ 19616 ] Revised Fall 2019 Workflow Update [ 21735 ]

                People

                • Assignee:
                  mason Mason Meyer (Inactive)
                  Reporter:
                  mason Mason Meyer (Inactive)
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  1 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: