Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Epic Link:
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Sprint:Sprint 27
Description
Some IPS result spans may have labels that are cut off (ex: "Span 1 of").
To examine this problem you may want to look at a gene id "NM_001144822" under the human genome (Chr1).
View the attached screenshots to help visualize the problem.
To reproduce:
1) Start ProtAnnot for the gene outlined above (NM_001144822).
2) Run "TMHMM" under InterProScan.
*Observe:
Some of the spans (as seen in the screenshots) just say "Span 1 of".
Attachments
Issue Links
- relates to
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DB-119 Add labels for gene models and ips result spans
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-594 [ 15667 ] |
| Description |
Some IPS result spans may have labels that are cut off (ex: "Span 1 of").
To examine this problem you may want to look at a gene id "NM_001144822" under the human genome (Chr1). View the attached screenshots to help visualize the problem. To reproduce: 1) Start ProtAnnot for the gene outlined above (NM_001144822). 2) Run "TMHMM" under InterProScan. *Observe: Some of the spans (as seen in the screenshots) just say "Span 1 of". |
| Attachment | Span1of.PNG [ 13162 ] | |
| Attachment | Span1ofProblem.PNG [ 13163 ] |
| Rank | Ranked higher |
| Rank | Ranked lower |
| Rank | Ranked higher |
| Sprint | Backlog Grooming Meeting [ 34 ] | Backlog Grooming Meeting 2 [ 35 ] |
| Rank | Ranked higher |
| Sprint | Backlog Grooming Meeting 2 [ 35 ] | Sprint 26 [ 34 ] |
| Rank | Ranked higher |
| Status | Open [ 1 ] | Needs Testing [ 10002 ] |
| Status | Needs Testing [ 10002 ] | Testing In Progress [ 10003 ] |
| Link | This issue relates to IGBF-922 [ IGBF-922 ] |
| Labels | ProtAnnot |
| Status | Testing In Progress [ 10003 ] | Needs Testing [ 10002 ] |
| Rank | Ranked lower |
| Status | Needs Testing [ 10002 ] | Testing Blocked [ 10201 ] |
| Status | Testing Blocked [ 10201 ] | Testing In Progress [ 10003 ] |
| Assignee | Mason Meyer [ mason ] |
| Status | Testing In Progress [ 10003 ] | Testing Blocked [ 10201 ] |
| Assignee | Mason Meyer [ mason ] | John Eckstein [ jeckstein ] |
| Status | Testing Blocked [ 10201 ] | Open [ 1 ] |
| Status | Open [ 1 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs Testing [ 10002 ] |
| Status | Needs Testing [ 10002 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs Testing [ 10002 ] |
| Assignee | John Eckstein [ jeckstein ] | Mason Meyer [ mason ] |
| Status | Needs Testing [ 10002 ] | Testing In Progress [ 10003 ] |
| Sprint | Sprint 26 [ 34 ] |
| Sprint | Sprint 27 [ 35 ] |
| Rank | Ranked higher |
| Resolution | Done [ 10000 ] | |
| Status | Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Workflow | Loraine Lab Workflow [ 16308 ] | Fall 2019 Workflow Update [ 19630 ] |
| Workflow | Fall 2019 Workflow Update [ 19630 ] | Revised Fall 2019 Workflow Update [ 21749 ] |