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  1. IGB
  2. IGBF-899

ProtAnnot gene models with no CDS Start/End may contain Protein Sequence in Selection Info

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Description

          I noticed that gene models with no CDS start or end that are displayed in ProtAnnot still show a protein sequence in ProtAnnot's selection info once the model is selected.

          View screenshot to see a description of the problem.

          This should be examined to see why this is being displayed.

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              ann.loraine Ann Loraine made changes -
              Workflow Fall 2019 Workflow Update [ 19631 ] Revised Fall 2019 Workflow Update [ 21750 ]
              ann.loraine Ann Loraine made changes -
              Workflow Loraine Lab Workflow [ 16309 ] Fall 2019 Workflow Update [ 19631 ]
              mason Mason Meyer (Inactive) made changes -
              Status Closed [ 6 ] Closed [ 6 ]
              mason Mason Meyer (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Testing In Progress [ 10003 ] Closed [ 6 ]
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              mason Mason Meyer (Inactive) added a comment -

              Testing for this issue included verifying that gene models with no CDS start/end contained the text "No translation for this gene model" in the properties tab of ProtAnnot when the gene model was selected.

              I also checked to verify that gene models which do have a CDS start/end still contained the proper protein sequence in the properties tab of ProtAnnot.

              Since this issue is resolved it will now be closed.

              Show
              mason Mason Meyer (Inactive) added a comment - Testing for this issue included verifying that gene models with no CDS start/end contained the text "No translation for this gene model" in the properties tab of ProtAnnot when the gene model was selected. I also checked to verify that gene models which do have a CDS start/end still contained the proper protein sequence in the properties tab of ProtAnnot. Since this issue is resolved it will now be closed.
              mason Mason Meyer (Inactive) made changes -
              Status Needs Testing [ 10002 ] Testing In Progress [ 10003 ]
              jeckstein John Eckstein (Inactive) made changes -
              Labels ProtAnnot
              jeckstein John Eckstein (Inactive) made changes -
              Assignee John Eckstein [ jeckstein ] Mason Meyer [ mason ]
              jeckstein John Eckstein (Inactive) made changes -
              Status In Progress [ 3 ] Needs Testing [ 10002 ]
              jeckstein John Eckstein (Inactive) made changes -
              Status Open [ 1 ] In Progress [ 3 ]
              jeckstein John Eckstein (Inactive) made changes -
              Status In Progress [ 3 ] Open [ 1 ]
              jeckstein John Eckstein (Inactive) made changes -
              Status Open [ 1 ] In Progress [ 3 ]
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              mason Mason Meyer (Inactive) added a comment - - edited

              It has been decided that we should simply replace the protein sequence from selection info with the text "No translation for this gene model" for gene models with no CDS start or end.

              Show
              mason Mason Meyer (Inactive) added a comment - - edited It has been decided that we should simply replace the protein sequence from selection info with the text "No translation for this gene model" for gene models with no CDS start or end.
              dcnorris David Norris (Inactive) made changes -
              Rank Ranked higher
              dcnorris David Norris (Inactive) made changes -
              Sprint Backlog Grooming Meeting 2 [ 35 ] Sprint 26 [ 34 ]
              dcnorris David Norris (Inactive) made changes -
              Sprint Backlog Grooming Meeting [ 34 ] Backlog Grooming Meeting 2 [ 35 ]
              dcnorris David Norris (Inactive) made changes -
              Rank Ranked higher
              dcnorris David Norris (Inactive) made changes -
              Rank Ranked lower
              mason Mason Meyer (Inactive) made changes -
              Rank Ranked higher
              mason Mason Meyer (Inactive) made changes -
              Sprint Sprint 25 [ 32 ] Backlog Grooming Meeting [ 34 ]
              mason Mason Meyer (Inactive) made changes -
              Assignee John Eckstein [ jeckstein ]
              mason Mason Meyer (Inactive) made changes -
              Field Original Value New Value
              Epic Link IGBF-497 [ 15559 ]
              mason Mason Meyer (Inactive) created issue -

                People

                • Assignee:
                  mason Mason Meyer (Inactive)
                  Reporter:
                  mason Mason Meyer (Inactive)
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                  Watchers:
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                  Dates

                  • Created:
                    Updated:
                    Resolved: