Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Epic Link:
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Sprint:Sprint 26
Description
I noticed that gene models with no CDS start or end that are displayed in ProtAnnot still show a protein sequence in ProtAnnot's selection info once the model is selected.
View screenshot to see a description of the problem.
This should be examined to see why this is being displayed.
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-497 [ 15559 ] |
| Assignee | John Eckstein [ jeckstein ] |
| Sprint | Sprint 25 [ 32 ] | Backlog Grooming Meeting [ 34 ] |
| Rank | Ranked higher |
| Rank | Ranked lower |
| Rank | Ranked higher |
| Sprint | Backlog Grooming Meeting [ 34 ] | Backlog Grooming Meeting 2 [ 35 ] |
| Sprint | Backlog Grooming Meeting 2 [ 35 ] | Sprint 26 [ 34 ] |
| Rank | Ranked higher |
| Status | Open [ 1 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Open [ 1 ] |
| Status | Open [ 1 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs Testing [ 10002 ] |
| Assignee | John Eckstein [ jeckstein ] | Mason Meyer [ mason ] |
| Labels | ProtAnnot |
| Status | Needs Testing [ 10002 ] | Testing In Progress [ 10003 ] |
Testing for this issue included verifying that gene models with no CDS start/end contained the text "No translation for this gene model" in the properties tab of ProtAnnot when the gene model was selected.
I also checked to verify that gene models which do have a CDS start/end still contained the proper protein sequence in the properties tab of ProtAnnot.
Since this issue is resolved it will now be closed.
| Resolution | Done [ 10000 ] | |
| Status | Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Status | Closed [ 6 ] | Closed [ 6 ] |
| Workflow | Loraine Lab Workflow [ 16309 ] | Fall 2019 Workflow Update [ 19631 ] |
| Workflow | Fall 2019 Workflow Update [ 19631 ] | Revised Fall 2019 Workflow Update [ 21750 ] |
It has been decided that we should simply replace the protein sequence from selection info with the text "No translation for this gene model" for gene models with no CDS start or end.