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  1. IGB
  2. IGBF-923

Change how the nucleotide and amino acid single-letter codes are displayed in ProtAnnot

        Details

        • Type: Improvement
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Description

          Change how the nucleotide and amino acid single-letter codes are displayed to make it match what is in IGB. Note how IGB displays protein sequence on top of gene models when you zoom in. Codons alternate background color and the font color of amino acids gets automatically selected to maximize readability. (Fuquan Wang did this.)

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              Improvement - An improvement or enhancement to an existing feature or task. IGBF-947 Shift amino acid overlay in Prot Annot exons slightly to the right

              • Major - Major loss of function.
              • Closed

                Activity

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                mason Mason Meyer (Inactive) added a comment - - edited

                Testing for this issue included:
                -Verifying that Prot Annot exons are displayed like IGB (amino acid sequence overlayed on top of alternating bars; the color of the bars changes based on the color of the exon).
                -Verifying that changing the color preferences for the ProtAnnot frames results in horizontal bars on exons that change according to the selected color.
                -Verifying that amino acid sequences are being displayed correctly for several different genomes.

                Since this issue is resolved it will now be closed.

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                mason Mason Meyer (Inactive) added a comment - - edited Testing for this issue included: -Verifying that Prot Annot exons are displayed like IGB (amino acid sequence overlayed on top of alternating bars; the color of the bars changes based on the color of the exon). -Verifying that changing the color preferences for the ProtAnnot frames results in horizontal bars on exons that change according to the selected color. -Verifying that amino acid sequences are being displayed correctly for several different genomes. Since this issue is resolved it will now be closed.

                  People

                  • Assignee:
                    mason Mason Meyer (Inactive)
                    Reporter:
                    mason Mason Meyer (Inactive)
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                    Dates

                    • Created:
                      Updated:
                      Resolved: