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  1. IGB
  2. IGBF-923

Change how the nucleotide and amino acid single-letter codes are displayed in ProtAnnot

        Details

        • Type: Improvement
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Description

          Change how the nucleotide and amino acid single-letter codes are displayed to make it match what is in IGB. Note how IGB displays protein sequence on top of gene models when you zoom in. Codons alternate background color and the font color of amino acids gets automatically selected to maximize readability. (Fuquan Wang did this.)

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              relates to

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-947 Shift amino acid overlay in Prot Annot exons slightly to the right

              • Major - Major loss of function.
              • Closed

                Activity

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                mason Mason Meyer (Inactive) created issue -
                mason Mason Meyer (Inactive) made changes -
                Field Original Value New Value
                Epic Link IGBF-594 [ 15667 ]
                jeckstein John Eckstein (Inactive) made changes -
                Assignee John Eckstein [ jeckstein ] Tarun Mall [ tmall ]
                tmall Tarun Mall (Inactive) made changes -
                Status Open [ 1 ] In Progress [ 3 ]
                tmall Tarun Mall (Inactive) made changes -
                Status In Progress [ 3 ] Needs Testing [ 10002 ]
                mason Mason Meyer (Inactive) made changes -
                Status Needs Testing [ 10002 ] Testing In Progress [ 10003 ]
                mason Mason Meyer (Inactive) made changes -
                Assignee Tarun Mall [ tmall ] Mason Meyer [ mason ]
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                mason Mason Meyer (Inactive) added a comment - - edited

                Testing for this issue included:
                -Verifying that Prot Annot exons are displayed like IGB (amino acid sequence overlayed on top of alternating bars; the color of the bars changes based on the color of the exon).
                -Verifying that changing the color preferences for the ProtAnnot frames results in horizontal bars on exons that change according to the selected color.
                -Verifying that amino acid sequences are being displayed correctly for several different genomes.

                Since this issue is resolved it will now be closed.

                Show
                mason Mason Meyer (Inactive) added a comment - - edited Testing for this issue included: -Verifying that Prot Annot exons are displayed like IGB (amino acid sequence overlayed on top of alternating bars; the color of the bars changes based on the color of the exon). -Verifying that changing the color preferences for the ProtAnnot frames results in horizontal bars on exons that change according to the selected color. -Verifying that amino acid sequences are being displayed correctly for several different genomes. Since this issue is resolved it will now be closed.
                mason Mason Meyer (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Testing In Progress [ 10003 ] Closed [ 6 ]
                mason Mason Meyer (Inactive) made changes -
                Link This issue relates to IGBF-947 [ IGBF-947 ]
                ann.loraine Ann Loraine made changes -
                Workflow Loraine Lab Workflow [ 16335 ] Fall 2019 Workflow Update [ 19650 ]
                ann.loraine Ann Loraine made changes -
                Workflow Fall 2019 Workflow Update [ 19650 ] Revised Fall 2019 Workflow Update [ 21769 ]

                  People

                  • Assignee:
                    mason Mason Meyer (Inactive)
                    Reporter:
                    mason Mason Meyer (Inactive)
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                    Dates

                    • Created:
                      Updated:
                      Resolved: