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  1. IGB
  2. IGBF-951

ProtAnnot spans may be missing a description field in the Properties tab

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Description

          Running the IPS database "TMHMM" on the gene model NM_001144822 will yield a span in ProtAnnot but the span does not contain a description field in the properties tab.

          The XML file however does contain a description:

          <tmhmm-match>
          <signature desc="Region of a membrane-bound protein predicted to be embedded in the membrane." ac="TMhelix">
          <signature-library-release version="2.0" library="TMHMM"/></signature><locations>
          <tmhmm-location end="238" start="216"/></locations></tmhmm-match>

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              mason Mason Meyer (Inactive) added a comment -

              Testing for this issue included:

              1) Verifying that description fields are added to the properties tab in ProtAnnot when the xml file returns a properties field.
              2) Verifying that the description field appears in the correct place in the properties tab.
              3) Verifying that the other fields in properties are not adversely affected by this change.

              Since this issue is resolved it will now be closed.

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              mason Mason Meyer (Inactive) added a comment - Testing for this issue included: 1) Verifying that description fields are added to the properties tab in ProtAnnot when the xml file returns a properties field. 2) Verifying that the description field appears in the correct place in the properties tab. 3) Verifying that the other fields in properties are not adversely affected by this change. Since this issue is resolved it will now be closed.

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                • Assignee:
                  mason Mason Meyer (Inactive)
                  Reporter:
                  mason Mason Meyer (Inactive)
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                    Updated:
                    Resolved: