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  1. IGB
  2. IGBF-951

ProtAnnot spans may be missing a description field in the Properties tab

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Description

          Running the IPS database "TMHMM" on the gene model NM_001144822 will yield a span in ProtAnnot but the span does not contain a description field in the properties tab.

          The XML file however does contain a description:

          <tmhmm-match>
          <signature desc="Region of a membrane-bound protein predicted to be embedded in the membrane." ac="TMhelix">
          <signature-library-release version="2.0" library="TMHMM"/></signature><locations>
          <tmhmm-location end="238" start="216"/></locations></tmhmm-match>

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              mason Mason Meyer (Inactive) created issue -
              mason Mason Meyer (Inactive) made changes -
              Field Original Value New Value
              Epic Link IGBF-439 [ 15497 ]
              jeckstein John Eckstein (Inactive) made changes -
              Status Open [ 1 ] In Progress [ 3 ]
              jeckstein John Eckstein (Inactive) made changes -
              Status In Progress [ 3 ] Needs Testing [ 10002 ]
              jeckstein John Eckstein (Inactive) made changes -
              Assignee John Eckstein [ jeckstein ] Mason Meyer [ mason ]
              mason Mason Meyer (Inactive) made changes -
              Status Needs Testing [ 10002 ] Testing In Progress [ 10003 ]
              dcnorris David Norris (Inactive) made changes -
              Sprint Sprint 26 [ 34 ]
              dcnorris David Norris (Inactive) made changes -
              Sprint Sprint 27 [ 35 ]
              dcnorris David Norris (Inactive) made changes -
              Rank Ranked higher
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              mason Mason Meyer (Inactive) added a comment -

              Testing for this issue included:

              1) Verifying that description fields are added to the properties tab in ProtAnnot when the xml file returns a properties field.
              2) Verifying that the description field appears in the correct place in the properties tab.
              3) Verifying that the other fields in properties are not adversely affected by this change.

              Since this issue is resolved it will now be closed.

              Show
              mason Mason Meyer (Inactive) added a comment - Testing for this issue included: 1) Verifying that description fields are added to the properties tab in ProtAnnot when the xml file returns a properties field. 2) Verifying that the description field appears in the correct place in the properties tab. 3) Verifying that the other fields in properties are not adversely affected by this change. Since this issue is resolved it will now be closed.
              mason Mason Meyer (Inactive) made changes -
              Description Running the IPS database "TMHMM" on the gene model NM_001144822 will yield a span in ProtAnnot but the span does not contain a description field in the properties tab.

              The XML file however does contain a description:

              <tmhmm-match>
              <signature desc="Region of a membrane-bound protein predicted to be embedded in the membrane." ac="TMhelix">
              <signature-library-release version="2.0" library="TMHMM"/></signature><locations>
              <tmhmm-location end="238" start="216"/></locations></tmhmm-match>

              The link to the full XML file can be found here:
              http://www.ebi.ac.uk/Tools/services/rest/iprscan5/result/iprscan5-R20150915-213723-0972-64851937-es/xml               		Running the IPS database "TMHMM" on the gene model NM_001144822 will yield a span in ProtAnnot but the span does not contain a description field in the properties tab.

              The XML file however does contain a description:

              <tmhmm-match>
              <signature desc="Region of a membrane-bound protein predicted to be embedded in the membrane." ac="TMhelix">
              <signature-library-release version="2.0" library="TMHMM"/></signature><locations>
              <tmhmm-location end="238" start="216"/></locations></tmhmm-match>
              mason Mason Meyer (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Testing In Progress [ 10003 ] Closed [ 6 ]
              mason Mason Meyer (Inactive) made changes -
              Status Closed [ 6 ] Closed [ 6 ]
              ann.loraine Ann Loraine made changes -
              Workflow Loraine Lab Workflow [ 16369 ] Fall 2019 Workflow Update [ 19670 ]
              ann.loraine Ann Loraine made changes -
              Workflow Fall 2019 Workflow Update [ 19670 ] Revised Fall 2019 Workflow Update [ 21789 ]

                People

                • Assignee:
                  mason Mason Meyer (Inactive)
                  Reporter:
                  mason Mason Meyer (Inactive)
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                  1 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: