Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Epic Link:
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Sprint:Sprint 27
Description
Running the IPS database "TMHMM" on the gene model NM_001144822 will yield a span in ProtAnnot but the span does not contain a description field in the properties tab.
The XML file however does contain a description:
<tmhmm-match>
<signature desc="Region of a membrane-bound protein predicted to be embedded in the membrane." ac="TMhelix">
<signature-library-release version="2.0" library="TMHMM"/></signature><locations>
<tmhmm-location end="238" start="216"/></locations></tmhmm-match>
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-439 [ 15497 ] |
| Status | Open [ 1 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs Testing [ 10002 ] |
| Assignee | John Eckstein [ jeckstein ] | Mason Meyer [ mason ] |
| Status | Needs Testing [ 10002 ] | Testing In Progress [ 10003 ] |
| Sprint | Sprint 26 [ 34 ] |
| Sprint | Sprint 27 [ 35 ] |
| Rank | Ranked higher |
| Description |
Running the IPS database "TMHMM" on the gene model NM_001144822 will yield a span in ProtAnnot but the span does not contain a description field in the properties tab.
The XML file however does contain a description: <tmhmm-match> <signature desc="Region of a membrane-bound protein predicted to be embedded in the membrane." ac="TMhelix"> <signature-library-release version="2.0" library="TMHMM"/></signature><locations> <tmhmm-location end="238" start="216"/></locations></tmhmm-match> The link to the full XML file can be found here: http://www.ebi.ac.uk/Tools/services/rest/iprscan5/result/iprscan5-R20150915-213723-0972-64851937-es/xml |
Running the IPS database "TMHMM" on the gene model NM_001144822 will yield a span in ProtAnnot but the span does not contain a description field in the properties tab.
The XML file however does contain a description: <tmhmm-match> <signature desc="Region of a membrane-bound protein predicted to be embedded in the membrane." ac="TMhelix"> <signature-library-release version="2.0" library="TMHMM"/></signature><locations> <tmhmm-location end="238" start="216"/></locations></tmhmm-match> |
| Resolution | Done [ 10000 ] | |
| Status | Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Status | Closed [ 6 ] | Closed [ 6 ] |
| Workflow | Loraine Lab Workflow [ 16369 ] | Fall 2019 Workflow Update [ 19670 ] |
| Workflow | Fall 2019 Workflow Update [ 19670 ] | Revised Fall 2019 Workflow Update [ 21789 ] |