Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-977

Exception generated when dragging at the intersection of sequence axis and zoom stripe in ProtAnnot

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Description

          *I only observed this on Mac, not on Windows.

          To reproduce:

          1) Open ProtAnnot and click-drag at the intersection of the zoom stripe and the sequence axis near the top of PA (not the coordinates axis, but the sequence axis, where the nucleotides can be seen).
          2) Do this multiple times until you generate an exception in the console.

          Exception:

          Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
          at com.affymetrix.genoviz.widget.NeoMap.select(NeoMap.java:1219)
          at com.lorainelab.protannot.GenomeView.mouseDragged(GenomeView.java:196)
          at com.affymetrix.genoviz.widget.NeoWidget.heardMouseEvent(NeoWidget.java:1337)
          at com.affymetrix.genoviz.widget.NeoMap.heardMouseEvent(NeoMap.java:1589)
          at com.affymetrix.genoviz.widget.NeoAbstractWidget.mouseDragged(NeoAbstractWidget.java:822)
          at com.affymetrix.genoviz.bioviews.View.heardMouseEvent(View.java:976)
          at com.affymetrix.genoviz.bioviews.View.mouseDragged(View.java:882)
          at java.awt.AWTEventMulticaster.mouseDragged(AWTEventMulticaster.java:320)
          at java.awt.Component.processMouseMotionEvent(Component.java:6573)
          at javax.swing.JComponent.processMouseMotionEvent(JComponent.java:3342)
          at java.awt.Component.processEvent(Component.java:6294)
          at java.awt.Container.processEvent(Container.java:2234)
          at java.awt.Component.dispatchEventImpl(Component.java:4881)
          at java.awt.Container.dispatchEventImpl(Container.java:2292)
          at java.awt.Component.dispatchEvent(Component.java:4703)
          at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
          at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4550)
          at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
          at java.awt.Container.dispatchEventImpl(Container.java:2278)
          at java.awt.Window.dispatchEventImpl(Window.java:2750)
          at java.awt.Component.dispatchEvent(Component.java:4703)
          at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
          at java.awt.EventQueue.access$500(EventQueue.java:97)
          at java.awt.EventQueue$3.run(EventQueue.java:709)
          at java.awt.EventQueue$3.run(EventQueue.java:703)
          at java.security.AccessController.doPrivileged(Native Method)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
          at java.awt.EventQueue$4.run(EventQueue.java:731)
          at java.awt.EventQueue$4.run(EventQueue.java:729)
          at java.security.AccessController.doPrivileged(Native Method)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
          at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
          at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
          at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
          at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
          at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
          at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
          at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
          Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
          at com.affymetrix.genoviz.widget.NeoMap.select(NeoMap.java:1219)
          at com.lorainelab.protannot.GenomeView.mouseDragged(GenomeView.java:196)
          at com.affymetrix.genoviz.widget.NeoWidget.heardMouseEvent(NeoWidget.java:1337)
          at com.affymetrix.genoviz.widget.NeoMap.heardMouseEvent(NeoMap.java:1589)
          at com.affymetrix.genoviz.widget.NeoAbstractWidget.mouseDragged(NeoAbstractWidget.java:822)
          at com.affymetrix.genoviz.bioviews.View.heardMouseEvent(View.java:976)
          at com.affymetrix.genoviz.bioviews.View.mouseDragged(View.java:882)
          at java.awt.AWTEventMulticaster.mouseDragged(AWTEventMulticaster.java:320)
          at java.awt.Component.processMouseMotionEvent(Component.java:6573)
          at javax.swing.JComponent.processMouseMotionEvent(JComponent.java:3342)
          at java.awt.Component.processEvent(Component.java:6294)
          at java.awt.Container.processEvent(Container.java:2234)
          at java.awt.Component.dispatchEventImpl(Component.java:4881)
          at java.awt.Container.dispatchEventImpl(Container.java:2292)
          at java.awt.Component.dispatchEvent(Component.java:4703)
          at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
          at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4550)
          at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
          at java.awt.Container.dispatchEventImpl(Container.java:2278)
          at java.awt.Window.dispatchEventImpl(Window.java:2750)
          at java.awt.Component.dispatchEvent(Component.java:4703)
          at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
          at java.awt.EventQueue.access$500(EventQueue.java:97)
          at java.awt.EventQueue$3.run(EventQueue.java:709)
          at java.awt.EventQueue$3.run(EventQueue.java:703)
          at java.security.AccessController.doPrivileged(Native Method)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
          at java.awt.EventQueue$4.run(EventQueue.java:731)
          at java.awt.EventQueue$4.run(EventQueue.java:729)
          at java.security.AccessController.doPrivileged(Native Method)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
          at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
          at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
          at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
          at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
          at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
          at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
          at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
          Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
          at com.affymetrix.genoviz.widget.NeoMap.select(NeoMap.java:1219)
          at com.lorainelab.protannot.GenomeView.mouseDragged(GenomeView.java:196)
          at com.affymetrix.genoviz.widget.NeoWidget.heardMouseEvent(NeoWidget.java:1337)
          at com.affymetrix.genoviz.widget.NeoMap.heardMouseEvent(NeoMap.java:1589)
          at com.affymetrix.genoviz.widget.NeoAbstractWidget.mouseDragged(NeoAbstractWidget.java:822)
          at com.affymetrix.genoviz.bioviews.View.heardMouseEvent(View.java:976)
          at com.affymetrix.genoviz.bioviews.View.mouseDragged(View.java:882)
          at java.awt.AWTEventMulticaster.mouseDragged(AWTEventMulticaster.java:320)
          at java.awt.Component.processMouseMotionEvent(Component.java:6573)
          at javax.swing.JComponent.processMouseMotionEvent(JComponent.java:3342)
          at java.awt.Component.processEvent(Component.java:6294)
          at java.awt.Container.processEvent(Container.java:2234)
          at java.awt.Component.dispatchEventImpl(Component.java:4881)
          at java.awt.Container.dispatchEventImpl(Container.java:2292)
          at java.awt.Component.dispatchEvent(Component.java:4703)
          at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
          at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4550)
          at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
          at java.awt.Container.dispatchEventImpl(Container.java:2278)
          at java.awt.Window.dispatchEventImpl(Window.java:2750)
          at java.awt.Component.dispatchEvent(Component.java:4703)
          at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
          at java.awt.EventQueue.access$500(EventQueue.java:97)
          at java.awt.EventQueue$3.run(EventQueue.java:709)
          at java.awt.EventQueue$3.run(EventQueue.java:703)
          at java.security.AccessController.doPrivileged(Native Method)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
          at java.awt.EventQueue$4.run(EventQueue.java:731)
          at java.awt.EventQueue$4.run(EventQueue.java:729)
          at java.security.AccessController.doPrivileged(Native Method)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
          at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
          at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
          at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
          at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
          at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
          at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
          at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
          Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
          at com.affymetrix.genoviz.widget.NeoMap.select(NeoMap.java:1219)
          at com.lorainelab.protannot.GenomeView.mouseDragged(GenomeView.java:196)
          at com.affymetrix.genoviz.widget.NeoWidget.heardMouseEvent(NeoWidget.java:1337)
          at com.affymetrix.genoviz.widget.NeoMap.heardMouseEvent(NeoMap.java:1589)
          at com.affymetrix.genoviz.widget.NeoAbstractWidget.mouseDragged(NeoAbstractWidget.java:822)
          at com.affymetrix.genoviz.bioviews.View.heardMouseEvent(View.java:976)
          at com.affymetrix.genoviz.bioviews.View.mouseDragged(View.java:882)
          at java.awt.AWTEventMulticaster.mouseDragged(AWTEventMulticaster.java:320)
          at java.awt.Component.processMouseMotionEvent(Component.java:6573)
          at javax.swing.JComponent.processMouseMotionEvent(JComponent.java:3342)
          at java.awt.Component.processEvent(Component.java:6294)
          at java.awt.Container.processEvent(Container.java:2234)
          at java.awt.Component.dispatchEventImpl(Component.java:4881)
          at java.awt.Container.dispatchEventImpl(Container.java:2292)
          at java.awt.Component.dispatchEvent(Component.java:4703)
          at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
          at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4550)
          at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
          at java.awt.Container.dispatchEventImpl(Container.java:2278)
          at java.awt.Window.dispatchEventImpl(Window.java:2750)
          at java.awt.Component.dispatchEvent(Component.java:4703)
          at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
          at java.awt.EventQueue.access$500(EventQueue.java:97)
          at java.awt.EventQueue$3.run(EventQueue.java:709)
          at java.awt.EventQueue$3.run(EventQueue.java:703)
          at java.security.AccessController.doPrivileged(Native Method)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
          at java.awt.EventQueue$4.run(EventQueue.java:731)
          at java.awt.EventQueue$4.run(EventQueue.java:729)
          at java.security.AccessController.doPrivileged(Native Method)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
          at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
          at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
          at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
          at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
          at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
          at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
          at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
          Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
          at com.affymetrix.genoviz.widget.NeoMap.select(NeoMap.java:1219)
          at com.lorainelab.protannot.GenomeView.mouseDragged(GenomeView.java:196)
          at com.affymetrix.genoviz.widget.NeoWidget.heardMouseEvent(NeoWidget.java:1337)
          at com.affymetrix.genoviz.widget.NeoMap.heardMouseEvent(NeoMap.java:1589)
          at com.affymetrix.genoviz.widget.NeoAbstractWidget.mouseDragged(NeoAbstractWidget.java:822)
          at com.affymetrix.genoviz.bioviews.View.heardMouseEvent(View.java:976)
          at com.affymetrix.genoviz.bioviews.View.mouseDragged(View.java:882)
          at java.awt.AWTEventMulticaster.mouseDragged(AWTEventMulticaster.java:320)
          at java.awt.Component.processMouseMotionEvent(Component.java:6573)
          at javax.swing.JComponent.processMouseMotionEvent(JComponent.java:3342)
          at java.awt.Component.processEvent(Component.java:6294)
          at java.awt.Container.processEvent(Container.java:2234)
          at java.awt.Component.dispatchEventImpl(Component.java:4881)
          at java.awt.Container.dispatchEventImpl(Container.java:2292)
          at java.awt.Component.dispatchEvent(Component.java:4703)
          at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
          at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4550)
          at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
          at java.awt.Container.dispatchEventImpl(Container.java:2278)
          at java.awt.Window.dispatchEventImpl(Window.java:2750)
          at java.awt.Component.dispatchEvent(Component.java:4703)
          at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
          at java.awt.EventQueue.access$500(EventQueue.java:97)
          at java.awt.EventQueue$3.run(EventQueue.java:709)
          at java.awt.EventQueue$3.run(EventQueue.java:703)
          at java.security.AccessController.doPrivileged(Native Method)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
          at java.awt.EventQueue$4.run(EventQueue.java:731)
          at java.awt.EventQueue$4.run(EventQueue.java:729)
          at java.security.AccessController.doPrivileged(Native Method)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
          at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
          at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
          at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
          at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
          at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
          at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
          at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
          Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
          at com.affymetrix.genoviz.widget.NeoMap.select(NeoMap.java:1219)
          at com.lorainelab.protannot.GenomeView.mouseDragged(GenomeView.java:196)
          at com.affymetrix.genoviz.widget.NeoWidget.heardMouseEvent(NeoWidget.java:1337)
          at com.affymetrix.genoviz.widget.NeoMap.heardMouseEvent(NeoMap.java:1589)
          at com.affymetrix.genoviz.widget.NeoAbstractWidget.mouseDragged(NeoAbstractWidget.java:822)
          at com.affymetrix.genoviz.bioviews.View.heardMouseEvent(View.java:976)
          at com.affymetrix.genoviz.bioviews.View.mouseDragged(View.java:882)
          at java.awt.AWTEventMulticaster.mouseDragged(AWTEventMulticaster.java:320)
          at java.awt.Component.processMouseMotionEvent(Component.java:6573)
          at javax.swing.JComponent.processMouseMotionEvent(JComponent.java:3342)
          at java.awt.Component.processEvent(Component.java:6294)
          at java.awt.Container.processEvent(Container.java:2234)
          at java.awt.Component.dispatchEventImpl(Component.java:4881)
          at java.awt.Container.dispatchEventImpl(Container.java:2292)
          at java.awt.Component.dispatchEvent(Component.java:4703)
          at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
          at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4550)
          at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
          at java.awt.Container.dispatchEventImpl(Container.java:2278)
          at java.awt.Window.dispatchEventImpl(Window.java:2750)
          at java.awt.Component.dispatchEvent(Component.java:4703)
          at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
          at java.awt.EventQueue.access$500(EventQueue.java:97)
          at java.awt.EventQueue$3.run(EventQueue.java:709)
          at java.awt.EventQueue$3.run(EventQueue.java:703)
          at java.security.AccessController.doPrivileged(Native Method)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
          at java.awt.EventQueue$4.run(EventQueue.java:731)
          at java.awt.EventQueue$4.run(EventQueue.java:729)
          at java.security.AccessController.doPrivileged(Native Method)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
          at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
          at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
          at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
          at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
          at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
          at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
          at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
          Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
          at com.affymetrix.genoviz.widget.NeoMap.select(NeoMap.java:1219)
          at com.lorainelab.protannot.GenomeView.mouseDragged(GenomeView.java:196)
          at com.affymetrix.genoviz.widget.NeoWidget.heardMouseEvent(NeoWidget.java:1337)
          at com.affymetrix.genoviz.widget.NeoMap.heardMouseEvent(NeoMap.java:1589)
          at com.affymetrix.genoviz.widget.NeoAbstractWidget.mouseDragged(NeoAbstractWidget.java:822)
          at com.affymetrix.genoviz.bioviews.View.heardMouseEvent(View.java:976)
          at com.affymetrix.genoviz.bioviews.View.mouseDragged(View.java:882)
          at java.awt.AWTEventMulticaster.mouseDragged(AWTEventMulticaster.java:320)
          at java.awt.Component.processMouseMotionEvent(Component.java:6573)
          at javax.swing.JComponent.processMouseMotionEvent(JComponent.java:3342)
          at java.awt.Component.processEvent(Component.java:6294)
          at java.awt.Container.processEvent(Container.java:2234)
          at java.awt.Component.dispatchEventImpl(Component.java:4881)
          at java.awt.Container.dispatchEventImpl(Container.java:2292)
          at java.awt.Component.dispatchEvent(Component.java:4703)
          at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
          at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4550)
          at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
          at java.awt.Container.dispatchEventImpl(Container.java:2278)
          at java.awt.Window.dispatchEventImpl(Window.java:2750)
          at java.awt.Component.dispatchEvent(Component.java:4703)
          at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
          at java.awt.EventQueue.access$500(EventQueue.java:97)
          at java.awt.EventQueue$3.run(EventQueue.java:709)
          at java.awt.EventQueue$3.run(EventQueue.java:703)
          at java.security.AccessController.doPrivileged(Native Method)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
          at java.awt.EventQueue$4.run(EventQueue.java:731)
          at java.awt.EventQueue$4.run(EventQueue.java:729)
          at java.security.AccessController.doPrivileged(Native Method)
          at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
          at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
          at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
          at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
          at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
          at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
          at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
          at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

            Attachments

              Activity

              Hide
              Permalink
              ann.loraine Ann Loraine added a comment -

              Very minor bug. Won't fix.

              Show
              ann.loraine Ann Loraine added a comment - Very minor bug. Won't fix.

                People

                • Assignee:
                  mason Mason Meyer (Inactive)
                  Reporter:
                  mason Mason Meyer (Inactive)
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  2 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: