Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-984

Add arrow buttons to navigate left and right in ProtAnnot.

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
    • Sprint:
      Sprint 30

      Attachments

        Activity

        Hide
        mason Mason Meyer (Inactive) added a comment - - edited

        Testing for this issue included:

        -Verifying that the green navigation arrows have been added to ProtAnnot.
        -Verifying that the green navigation arrows are navigating horizontally.
        -Verifying that the scroll bars in ProtAnnot are still operating as expected.
        -Verifying that there are no unwanted side effects when dragging the arrows onto the ProtAnnot stage.
        -Verifying that IGB's green arrows are still operating as expected.
        -Verifying that there are no other unwanted side effects resulting from this implementation.

        Since this issue is resolved it will now be closed.

        Show
        mason Mason Meyer (Inactive) added a comment - - edited Testing for this issue included: -Verifying that the green navigation arrows have been added to ProtAnnot. -Verifying that the green navigation arrows are navigating horizontally. -Verifying that the scroll bars in ProtAnnot are still operating as expected. -Verifying that there are no unwanted side effects when dragging the arrows onto the ProtAnnot stage. -Verifying that IGB's green arrows are still operating as expected. -Verifying that there are no other unwanted side effects resulting from this implementation. Since this issue is resolved it will now be closed.
        Hide
        mason Mason Meyer (Inactive) added a comment -

        When I enable the Bioviz Development plugin repo something odd is happening. I expect the logo/letter next to each plugin name in the App Manager to switch to a different color and still use the letter "B", but when I enable the Development repo, all of the plugin logo letters change to "L" as in Local. Furthermore, I can install ProtAnnot in this state but I get an exception and am not able to start ProtAnnot from the tools menu (the exception can be seen below).

        I assume I should be using the development repo to test IGBF-984 because when I try to test with the plain Bioviz repo I am not seeing the changes specified in IGBF-984 (arrow buttons to navigate left anf right in ProtAnnot).

        For now, I am moving this into the testing blocked column and assigning it to John since he is taking a look at this.

        Exception generated:

        ERROR: Resolver: Install error - com.lorainelab.protannot
        java.io.IOException: Error accessing file:/opt/jenkins_home/jobs/Development_Branch/workspace/extbundles/optional/protannot-8.6.0.jar
        at org.apache.felix.bundlerepository.impl.FileUtil.openURL(FileUtil.java:217)
        at org.apache.felix.bundlerepository.impl.FileUtil.openURL(FileUtil.java:199)
        at org.apache.felix.bundlerepository.impl.ResolverImpl.deploy(ResolverImpl.java:629)
        at com.lorainelab.igb.plugins.BundleActionManager.installBundle(BundleActionManager.java:122)
        at com.lorainelab.igb.plugins.BundleActionManager.access$000(BundleActionManager.java:37)
        at com.lorainelab.igb.plugins.BundleActionManager$1.get(BundleActionManager.java:101)
        at com.lorainelab.igb.plugins.BundleActionManager$1.get(BundleActionManager.java:96)
        at java.util.concurrent.CompletableFuture$AsyncSupply.run(Unknown Source)
        at java.util.concurrent.CompletableFuture$AsyncSupply.exec(Unknown Source)
        at java.util.concurrent.ForkJoinTask.doExec(Unknown Source)
        at java.util.concurrent.ForkJoinPool$WorkQueue.runTask(Unknown Source)
        at java.util.concurrent.ForkJoinPool.runWorker(Unknown Source)
        at java.util.concurrent.ForkJoinWorkerThread.run(Unknown Source)
        Caused by: java.io.FileNotFoundException: \opt\jenkins_home\jobs\Development_Branch\workspace\extbundles\optional\protannot-8.6.0.jar (The system cannot find the path specified)
        at java.io.FileInputStream.open0(Native Method)
        at java.io.FileInputStream.open(Unknown Source)
        at java.io.FileInputStream.<init>(Unknown Source)
        at java.io.FileInputStream.<init>(Unknown Source)
        at sun.net.www.protocol.file.FileURLConnection.connect(Unknown Source)
        at sun.net.www.protocol.file.FileURLConnection.getInputStream(Unknown Source)
        at org.apache.felix.bundlerepository.impl.FileUtil.openURL(FileUtil.java:209)
        ... 12 more

        Show
        mason Mason Meyer (Inactive) added a comment - When I enable the Bioviz Development plugin repo something odd is happening. I expect the logo/letter next to each plugin name in the App Manager to switch to a different color and still use the letter "B", but when I enable the Development repo, all of the plugin logo letters change to "L" as in Local. Furthermore, I can install ProtAnnot in this state but I get an exception and am not able to start ProtAnnot from the tools menu (the exception can be seen below). I assume I should be using the development repo to test IGBF-984 because when I try to test with the plain Bioviz repo I am not seeing the changes specified in IGBF-984 (arrow buttons to navigate left anf right in ProtAnnot). For now, I am moving this into the testing blocked column and assigning it to John since he is taking a look at this. Exception generated: ERROR: Resolver: Install error - com.lorainelab.protannot java.io.IOException: Error accessing file:/opt/jenkins_home/jobs/Development_Branch/workspace/extbundles/optional/protannot-8.6.0.jar at org.apache.felix.bundlerepository.impl.FileUtil.openURL(FileUtil.java:217) at org.apache.felix.bundlerepository.impl.FileUtil.openURL(FileUtil.java:199) at org.apache.felix.bundlerepository.impl.ResolverImpl.deploy(ResolverImpl.java:629) at com.lorainelab.igb.plugins.BundleActionManager.installBundle(BundleActionManager.java:122) at com.lorainelab.igb.plugins.BundleActionManager.access$000(BundleActionManager.java:37) at com.lorainelab.igb.plugins.BundleActionManager$1.get(BundleActionManager.java:101) at com.lorainelab.igb.plugins.BundleActionManager$1.get(BundleActionManager.java:96) at java.util.concurrent.CompletableFuture$AsyncSupply.run(Unknown Source) at java.util.concurrent.CompletableFuture$AsyncSupply.exec(Unknown Source) at java.util.concurrent.ForkJoinTask.doExec(Unknown Source) at java.util.concurrent.ForkJoinPool$WorkQueue.runTask(Unknown Source) at java.util.concurrent.ForkJoinPool.runWorker(Unknown Source) at java.util.concurrent.ForkJoinWorkerThread.run(Unknown Source) Caused by: java.io.FileNotFoundException: \opt\jenkins_home\jobs\Development_Branch\workspace\extbundles\optional\protannot-8.6.0.jar (The system cannot find the path specified) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(Unknown Source) at java.io.FileInputStream.<init>(Unknown Source) at java.io.FileInputStream.<init>(Unknown Source) at sun.net.www.protocol.file.FileURLConnection.connect(Unknown Source) at sun.net.www.protocol.file.FileURLConnection.getInputStream(Unknown Source) at org.apache.felix.bundlerepository.impl.FileUtil.openURL(FileUtil.java:209) ... 12 more

          People

          • Assignee:
            mason Mason Meyer (Inactive)
            Reporter:
            tmall Tarun Mall (Inactive)
          • Votes:
            0 Vote for this issue
            Watchers:
            2 Start watching this issue

            Dates

            • Created:
              Updated:
              Resolved: