Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      1) run_igb
      2) select homo sapiens, H_sapiens_Feb_2009
      3) range chr20 : 30,094,422 - 30,298,756
      4) load sequence in view
      5) load file SRC587518.101029_SN429_0051_A_FC80AT0_IX_PE.001.s_5.gsnap.merged.concordant_uniq.bam
      (in dropbox
      http://dl.dropbox.com/u/31638443/SRC587518.101029_SN429_0051_A_FC80AT0_IX_PE.001.s_5.gsnap.merged.concordant_uniq.bam
      http://dl.dropbox.com/u/31638443/SRC587518.101029_SN429_0051_A_FC80AT0_IX_PE.001.s_5.gsnap.merged.concordant_uniq.bam.bai
      )
      6) refresh data
      7) create a mismatch graph on the + strand

      I get:

      Exception in thread "AWT-EventQueue-0" java.lang.ArrayIndexOutOfBoundsException: 101742
      at com.affymetrix.genometryImpl.SeqSymSummarizer.getMismatchGraph(SeqSymSummarizer.java:84)
      at com.affymetrix.igb.view.DependentData.createMisMatchGraph(DependentData.java:81)
      at com.affymetrix.igb.view.DependentData.createTier(DependentData.java:57)
      at com.affymetrix.igb.view.TrackView.addToDependentList(TrackView.java:300)
      at com.affymetrix.igb.tiers.SeqMapViewPopup.addMisMatchTier(SeqMapViewPopup.java:654)
      . . .

        Attachments

          Activity

          Hide
          hiralv Hiral Vora (Inactive) added a comment -

          Fixed.

          Show
          hiralv Hiral Vora (Inactive) added a comment - Fixed.
          Hide
          fwang4 Fuquan Wang (Inactive) added a comment - - edited

          Passed for 7.0.0 (11982) Mac

          Show
          fwang4 Fuquan Wang (Inactive) added a comment - - edited Passed for 7.0.0 (11982) Mac

            People

            • Assignee:
              Unassigned
              Reporter:
              alyssa Alyssa Gulledge (Inactive)
            • Votes:
              0 Vote for this issue
              Watchers:
              0 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved: