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  1. Bug Repository
  2. BUG-189

Mismatch graph will not work if region selected is too large

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            If a very large region (low number of bam reads) is selected and mismatch graph is chose, IGB cannot deal with it. Create a warning 'region too large' or make IGB capable of making BIG mismatch graphs

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                relates to

                Task - A task that needs to be done. BUG-651 Windows specific bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

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                  ann.loraine Ann Loraine added a comment -

                  This should work fine now. Please check.

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                  ann.loraine Ann Loraine added a comment - This should work fine now. Please check.
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed v9856 Windows

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                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9856 Windows
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                  anuj Anuj Puram (Inactive) added a comment -

                  Passed v9908 on Mac

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                  anuj Anuj Puram (Inactive) added a comment - Passed v9908 on Mac
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  Broken again - see image. Only 1/4 of memory used, loaded a large area, with not very high counts, but 'create depth graph' failed to produce the graph, even though it produces an empty track with the right name.

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                  alyssa Alyssa Gulledge (Inactive) added a comment - Broken again - see image. Only 1/4 of memory used, loaded a large area, with not very high counts, but 'create depth graph' failed to produce the graph, even though it produces an empty track with the right name.
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                  hiralv Hiral Vora (Inactive) added a comment - - edited

                  Could not reproduce.

                  More over this bug is related to mismatch graph and it happened due a very particular reason. Depth graph cannot have the same reason. Also, if you see your screenshot at the bottom it's still loading the graph.

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                  hiralv Hiral Vora (Inactive) added a comment - - edited Could not reproduce. More over this bug is related to mismatch graph and it happened due a very particular reason. Depth graph cannot have the same reason. Also, if you see your screenshot at the bottom it's still loading the graph.

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: