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  1. Bug Repository
  2. BUG-189

Mismatch graph will not work if region selected is too large

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            If a very large region (low number of bam reads) is selected and mismatch graph is chose, IGB cannot deal with it. Create a warning 'region too large' or make IGB capable of making BIG mismatch graphs

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                Issue Links

                relates to

                Task - A task that needs to be done. BUG-651 Windows specific bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  alyssa Alyssa Gulledge (Inactive) created issue -
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Hiral Vora [ hiralv ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Project IGB6.6 [ 10021 ] IGB 6.7 [ 10040 ]
                  Key IGBA-7 IGBB-11
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ]
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                  ann.loraine Ann Loraine added a comment -

                  This should work fine now. Please check.

                  Show
                  ann.loraine Ann Loraine added a comment - This should work fine now. Please check.
                  ann.loraine Ann Loraine made changes -
                  Assignee Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 6.7 [ 10040 ] Bug Repository [ 10030 ]
                  Key IGBB-11 BUG-189
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Katharine Kubiak [ kkubiak ]
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed v9856 Windows

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9856 Windows
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Assignee Katharine Kubiak [ kkubiak ] Anuj Puram [ anuj ]
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                  anuj Anuj Puram (Inactive) added a comment -

                  Passed v9908 on Mac

                  Show
                  anuj Anuj Puram (Inactive) added a comment - Passed v9908 on Mac
                  anuj Anuj Puram (Inactive) made changes -
                  Assignee Anuj Puram [ anuj ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue is blocked by BUG-639 [ BUG-639 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Attachment broken depth.png [ 11784 ]
                  Hide
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  Broken again - see image. Only 1/4 of memory used, loaded a large area, with not very high counts, but 'create depth graph' failed to produce the graph, even though it produces an empty track with the right name.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - Broken again - see image. Only 1/4 of memory used, loaded a large area, with not very high counts, but 'create depth graph' failed to produce the graph, even though it produces an empty track with the right name.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-651 [ BUG-651 ]
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                  hiralv Hiral Vora (Inactive) added a comment - - edited

                  Could not reproduce.

                  More over this bug is related to mismatch graph and it happened due a very particular reason. Depth graph cannot have the same reason. Also, if you see your screenshot at the bottom it's still loading the graph.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - - edited Could not reproduce. More over this bug is related to mismatch graph and it happened due a very particular reason. Depth graph cannot have the same reason. Also, if you see your screenshot at the bottom it's still loading the graph.
                  hiralv Hiral Vora (Inactive) made changes -
                  Attachment large_depth_graph.png [ 11785 ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue is blocked by BUG-639 [ BUG-639 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: