Uploaded image for project: 'Bug Repository'
  1. Bug Repository
  2. BUG-249

bad error message for Sequence Viewer

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Minor
          • Resolution: Fixed
          • Labels:
            None

            Description

            • clear prefs
            • start IGB
            • click View > View Genomic Sequence in Sequence Viewer

            a error comes up "Some error ocurred, Please raise a bug request"

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-608 Sequence viewer bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

                  Ascending order - Click to sort in descending order
                  Hide
                  Permalink
                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r9898.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r9898.
                  Hide
                  Permalink
                  darius darius added a comment -

                  Passed 7.0 (11865) Mac

                  Show
                  darius darius added a comment - Passed 7.0 (11865) Mac
                  Hide
                  Permalink
                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  This not throwing an error, but it is still a problem. You should NEVER be able to access the Sequence Viewer without first selecting something. Currently you can "View Genomic Sequence in Sequence Viewer" from the view menu. You can use it without even selecting a species (a rolling bar with 'start abstract sequence viewer' starts and does not stop. If you have a species with autoloaded track and use it withOUT selecting a glyph or region, then it will load all sequence, but never open the viewer. Can we just disable the function if nothing is selected?

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - This not throwing an error, but it is still a problem. You should NEVER be able to access the Sequence Viewer without first selecting something. Currently you can "View Genomic Sequence in Sequence Viewer" from the view menu. You can use it without even selecting a species (a rolling bar with 'start abstract sequence viewer' starts and does not stop. If you have a species with autoloaded track and use it withOUT selecting a glyph or region, then it will load all sequence, but never open the viewer. Can we just disable the function if nothing is selected?
                  Hide
                  Permalink
                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r13717.
                  You can select it but it won't do anything.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r13717. You can select it but it won't do anything.
                  Hide
                  Permalink
                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  Still the other issue. Start IGB, select homo sapiens. Do NOT select anything in particular, use the "View Genomic...". It will load all sequence within view, it will "start abstract sequence viewer" but the bar will never stop rolling. Is it trying to show an entire chromoome sequence in the sequence viewer? There has to be some kind of check for the size of the sequence it is trying to display... Or you should not be able to "View..." without selecting something first.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - Still the other issue. Start IGB, select homo sapiens. Do NOT select anything in particular, use the "View Genomic...". It will load all sequence within view, it will "start abstract sequence viewer" but the bar will never stop rolling. Is it trying to show an entire chromoome sequence in the sequence viewer? There has to be some kind of check for the size of the sequence it is trying to display... Or you should not be able to "View..." without selecting something first.
                  Hide
                  Permalink
                  hiralv Hiral Vora (Inactive) added a comment -

                  As discussed disabled sequence viewer option without any selection in r13725.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - As discussed disabled sequence viewer option without any selection in r13725.

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
                    • Votes:
                      0 Vote for this issue
                      Watchers:
                      0 Start watching this issue

                      Dates

                      • Created:
                        Updated:
                        Resolved: