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  1. Bug Repository
  2. BUG-249

bad error message for Sequence Viewer

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Minor
          • Resolution: Fixed
          • Labels:
            None

            Description

            • clear prefs
            • start IGB
            • click View > View Genomic Sequence in Sequence Viewer

            a error comes up "Some error ocurred, Please raise a bug request"

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-608 Sequence viewer bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  lfrohman Lance Frohman (Inactive) created issue -
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r9898.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r9898.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 6.7 [ 10040 ] Bug Repository [ 10030 ]
                  Key IGBB-215 BUG-249
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                  darius darius added a comment -

                  Passed 7.0 (11865) Mac

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                  darius darius added a comment - Passed 7.0 (11865) Mac
                  darius darius made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Darius Bost [ darius ]
                  darius darius made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Darius Bost [ darius ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Summary bad error message bad error message for Sequence Viewer
                  Reporter Lance Frohman [ lfrohman ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-608 [ BUG-608 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  This not throwing an error, but it is still a problem. You should NEVER be able to access the Sequence Viewer without first selecting something. Currently you can "View Genomic Sequence in Sequence Viewer" from the view menu. You can use it without even selecting a species (a rolling bar with 'start abstract sequence viewer' starts and does not stop. If you have a species with autoloaded track and use it withOUT selecting a glyph or region, then it will load all sequence, but never open the viewer. Can we just disable the function if nothing is selected?

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - This not throwing an error, but it is still a problem. You should NEVER be able to access the Sequence Viewer without first selecting something. Currently you can "View Genomic Sequence in Sequence Viewer" from the view menu. You can use it without even selecting a species (a rolling bar with 'start abstract sequence viewer' starts and does not stop. If you have a species with autoloaded track and use it withOUT selecting a glyph or region, then it will load all sequence, but never open the viewer. Can we just disable the function if nothing is selected?
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r13717.
                  You can select it but it won't do anything.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r13717. You can select it but it won't do anything.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  Still the other issue. Start IGB, select homo sapiens. Do NOT select anything in particular, use the "View Genomic...". It will load all sequence within view, it will "start abstract sequence viewer" but the bar will never stop rolling. Is it trying to show an entire chromoome sequence in the sequence viewer? There has to be some kind of check for the size of the sequence it is trying to display... Or you should not be able to "View..." without selecting something first.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - Still the other issue. Start IGB, select homo sapiens. Do NOT select anything in particular, use the "View Genomic...". It will load all sequence within view, it will "start abstract sequence viewer" but the bar will never stop rolling. Is it trying to show an entire chromoome sequence in the sequence viewer? There has to be some kind of check for the size of the sequence it is trying to display... Or you should not be able to "View..." without selecting something first.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  As discussed disabled sequence viewer option without any selection in r13725.

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                  hiralv Hiral Vora (Inactive) added a comment - As discussed disabled sequence viewer option without any selection in r13725.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: