V.13526, Mac, Java 1.06.0_37
When uploading CHP legacy file, through 'File' > 'Open file…' or by simply dragging the file into the main viewer, window appears displaying 'ERROR: CHP file is in legacy format, cannot be loaded'
A track for the data DOES appears in the viewer as well as the 'Data Management Table'. Is this what this bug checks for?
Java console shows:
Parsing CHP file: /var/folders/_k/y1wr6vjs6rd4pqpznf1rc7h80000gn/T/ArabidopsisATH1-121502.CHP.gz8281635960027639029.tmp
CHP file is for legacy data: affymetrix.fusion.chp.FusionCHPLegacyData@159dab43
Alg name: ExpressionStat
Alg version: 5.0
Assay type: 0
Chip type: ATH1-121501
Rows: 712, Columns: 712
Parent .cel file: ArabidopsisATH1-121502.CEL
Program ID: GeneChipAnalysis.GEBaseCall.1
number of probesets: 22810
Stopped loading, parsing Legacy CHP data only partially implemented!
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ERROR: CHP file is in legacy format, cannot be loaded
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Works fine. Use the attached file to test the legacy CHP type.