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    • Type: Sub-task
    • Status: Closed (View Workflow)
    • Priority: Minor
    • Resolution: Fixed
    • Labels:
      None

      Description

      If chp file throws error that it is in legacy format, the it won't show up in table.

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            alyssa Alyssa Gulledge (Inactive) added a comment - - edited

            Works fine. Use the attached file to test the legacy CHP type.

            Show
            alyssa Alyssa Gulledge (Inactive) added a comment - - edited Works fine. Use the attached file to test the legacy CHP type.
            Hide
            fwang4 Fuquan Wang (Inactive) added a comment - - edited

            Show up in data management table on 7.0.0 (11884) Mac.

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            fwang4 Fuquan Wang (Inactive) added a comment - - edited Show up in data management table on 7.0.0 (11884) Mac.
            Hide
            richard Richard Linchangco (Inactive) added a comment -

            V.13526, Mac, Java 1.06.0_37

            When uploading CHP legacy file, through 'File' > 'Open file…' or by simply dragging the file into the main viewer, window appears displaying 'ERROR: CHP file is in legacy format, cannot be loaded'

            A track for the data DOES appears in the viewer as well as the 'Data Management Table'. Is this what this bug checks for?

            Java console shows:

            Parsing CHP file: /var/folders/_k/y1wr6vjs6rd4pqpznf1rc7h80000gn/T/ArabidopsisATH1-121502.CHP.gz8281635960027639029.tmp
            CHP file is for legacy data: affymetrix.fusion.chp.FusionCHPLegacyData@159dab43
            Alg name: ExpressionStat
            Alg version: 5.0
            Assay type: 0
            Chip type: ATH1-121501
            Rows: 712, Columns: 712
            Parent .cel file: ArabidopsisATH1-121502.CEL
            Program ID: GeneChipAnalysis.GEBaseCall.1
            number of probesets: 22810
            Stopped loading, parsing Legacy CHP data only partially implemented!

            -------------------------------------------------------
            ERROR: CHP file is in legacy format, cannot be loaded
            -------------------------------------------------------

            Show
            richard Richard Linchangco (Inactive) added a comment - V.13526, Mac, Java 1.06.0_37 When uploading CHP legacy file, through 'File' > 'Open file…' or by simply dragging the file into the main viewer, window appears displaying 'ERROR: CHP file is in legacy format, cannot be loaded' A track for the data DOES appears in the viewer as well as the 'Data Management Table'. Is this what this bug checks for? Java console shows: Parsing CHP file: /var/folders/_k/y1wr6vjs6rd4pqpznf1rc7h80000gn/T/ArabidopsisATH1-121502.CHP.gz8281635960027639029.tmp CHP file is for legacy data: affymetrix.fusion.chp.FusionCHPLegacyData@159dab43 Alg name: ExpressionStat Alg version: 5.0 Assay type: 0 Chip type: ATH1-121501 Rows: 712, Columns: 712 Parent .cel file: ArabidopsisATH1-121502.CEL Program ID: GeneChipAnalysis.GEBaseCall.1 number of probesets: 22810 Stopped loading, parsing Legacy CHP data only partially implemented! ------------------------------------------------------- ERROR: CHP file is in legacy format, cannot be loaded -------------------------------------------------------
            Hide
            alyssa Alyssa Gulledge (Inactive) added a comment -

            Hiral - you know how Fuquan? or you put in the option that if you load a file with an error in it, IGB will offer to remove it for you? This is one of those cases, and in fact all 'legacy formats' that IGB cannot open should have IGB offer to remove this for you.

            Show
            alyssa Alyssa Gulledge (Inactive) added a comment - Hiral - you know how Fuquan? or you put in the option that if you load a file with an error in it, IGB will offer to remove it for you? This is one of those cases, and in fact all 'legacy formats' that IGB cannot open should have IGB offer to remove this for you.
            Hide
            hiralv Hiral Vora (Inactive) added a comment -

            Fixed in r13619-13621.

            It would do the following and cannot it be fixed at this moment.
            1) This would get logged on console as error.
            2) It would show two popups i.e. one to show message about legacy format and another to give an option to remove the file.

            Show
            hiralv Hiral Vora (Inactive) added a comment - Fixed in r13619-13621. It would do the following and cannot it be fixed at this moment. 1) This would get logged on console as error. 2) It would show two popups i.e. one to show message about legacy format and another to give an option to remove the file.
            Hide
            alyssa Alyssa Gulledge (Inactive) added a comment -

            This is an acceptable resolution

            Show
            alyssa Alyssa Gulledge (Inactive) added a comment - This is an acceptable resolution

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              • Assignee:
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                Reporter:
                hiralv Hiral Vora (Inactive)
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                  Updated:
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