Uploaded image for project: 'Bug Repository'
  1. Bug Repository
  2. BUG-845

Handle multiple CDS in gff3

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. BUG-622 File format issues

              • Blocker - Blocks development and/or testing work, production could not run.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                hiralv Hiral Vora (Inactive) created issue -
                hiralv Hiral Vora (Inactive) made changes -
                Field Original Value New Value
                Assignee Ann Loraine [ aloraine ] Hiral Vora [ hiralv ]
                hiralv Hiral Vora (Inactive) made changes -
                Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                Hide
                Permalink
                alyssa Alyssa Gulledge (Inactive) added a comment -

                ALL GFF and GTF at this point appear to read 1000000000 for scaffold based sequences... or at least the examples I have been given.

                Show
                alyssa Alyssa Gulledge (Inactive) added a comment - ALL GFF and GTF at this point appear to read 1000000000 for scaffold based sequences... or at least the examples I have been given.
                alyssa Alyssa Gulledge (Inactive) made changes -
                Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
                Hide
                Permalink
                hiralv Hiral Vora (Inactive) added a comment -

                Length issue cannot be fixed.

                Show
                hiralv Hiral Vora (Inactive) added a comment - Length issue cannot be fixed.
                hiralv Hiral Vora (Inactive) made changes -
                Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                Hide
                Permalink
                alyssa Alyssa Gulledge (Inactive) added a comment -

                Can we get the number set smaller? I mean the largest chromosome known, human X is still not even 200000000, and the number being used is 5 times that! Too many times, data gets compacted into a tiny thin line in the the 1-10k region, and the track looks like it is empty...

                Show
                alyssa Alyssa Gulledge (Inactive) added a comment - Can we get the number set smaller? I mean the largest chromosome known, human X is still not even 200000000, and the number being used is 5 times that! Too many times, data gets compacted into a tiny thin line in the the 1-10k region, and the track looks like it is empty...
                alyssa Alyssa Gulledge (Inactive) made changes -
                Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
                Hide
                Permalink
                hiralv Hiral Vora (Inactive) added a comment -

                Done in r14883.

                Show
                hiralv Hiral Vora (Inactive) added a comment - Done in r14883.
                hiralv Hiral Vora (Inactive) made changes -
                Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                alyssa Alyssa Gulledge (Inactive) made changes -
                Status Open [ 1 ] Resolved [ 5 ]
                Assignee Alyssa Gulledge [ alyssa ]
                Resolution Fixed [ 1 ]
                alyssa Alyssa Gulledge (Inactive) made changes -
                Status Resolved [ 5 ] Closed [ 6 ]
                alyssa Alyssa Gulledge (Inactive) made changes -
                Project IGB 7.1 [ 10240 ] Bug Repository [ 10030 ]
                Key IGBD-250 BUG-845
                alyssa Alyssa Gulledge (Inactive) made changes -
                Link This issue relates to BUG-622 [ BUG-622 ]
                alyssa Alyssa Gulledge (Inactive) made changes -
                Resolution Fixed [ 1 ]
                Status Closed [ 6 ] Reopened [ 4 ]
                Assignee Tarun Santosh [ tkanapar ]
                Hide
                Permalink
                tkanapar Tarun Santosh (Inactive) added a comment -

                Passed in Mac IGB 7.0.4 (15396)

                Show
                tkanapar Tarun Santosh (Inactive) added a comment - Passed in Mac IGB 7.0.4 (15396)
                tkanapar Tarun Santosh (Inactive) made changes -
                Status Reopened [ 4 ] Closed [ 6 ]
                Resolution Fixed [ 1 ]
                hiralv Hiral Vora (Inactive) made changes -
                Resolution Fixed [ 1 ]
                Status Closed [ 6 ] Reopened [ 4 ]
                Assignee Tarun Santosh [ tkanapar ]
                hiralv Hiral Vora (Inactive) made changes -
                Status Reopened [ 4 ] Closed [ 6 ]
                Resolution Fixed [ 1 ]

                  People

                  • Assignee:
                    Unassigned
                    Reporter:
                    hiralv Hiral Vora (Inactive)
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    0 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: