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  1. Bug Repository
  2. BUG-845 Handle multiple CDS in gff3
  3. BUG-864

problem with reading gff3 file

          Details

          • Type: Sub-task
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            The attached file is output from GMAP, a popular alignment program that also predicts genes from alignments.

            When I open it in IGB the attached image is displayed. It should have shown a single gene model with CDSs.

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                relates to

                Task - A task that needs to be done. BUG-622 File format issues

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r14751.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r14751.
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                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited

                  looks good, but can NOT select the whole 1st exon by selecting the UTR - each section must be selected individually, with shift.

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                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited looks good, but can NOT select the whole 1st exon by selecting the UTR - each section must be selected individually, with shift.
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Selection seems to be working fine for me.

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                  hiralv Hiral Vora (Inactive) added a comment - Selection seems to be working fine for me.
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                  tkanapar Tarun Santosh (Inactive) added a comment -

                  Passed in Mac IGB 7.0.4 (15396)

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                  tkanapar Tarun Santosh (Inactive) added a comment - Passed in Mac IGB 7.0.4 (15396)

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      ann.loraine Ann Loraine
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                      Dates

                      • Created:
                        Updated:
                        Resolved: