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  1. Bug Repository
  2. BUG-845 Handle multiple CDS in gff3
  3. BUG-863

Glimmer gff3 not read properly in IGB

          Details

          • Type: Sub-task
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            See attached.

            Glimmmer GFF is not being shown correctly.

            The GFF and BED version are attached. This is blueberry genome.

              Attachments

              1. 20130611_glimmerHMM_arabidopsis.bed.gz
                1.41 MB
                Ann Loraine
              2. 20130611_glimmerHMM_arabidopsis.bed.gz.tbi
                226 kB
                Ann Loraine
              3. 20130611_glimmerHMM_arabidopsis.gff3.gz
                2.71 MB
                Ann Loraine
              4. 20130611_glimmerHMM_arabidopsis.gff3.gz.tbi
                244 kB
                Ann Loraine
              5. Glimmer.png
                171 kB
                Ann Loraine

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-622 File format issues

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r14698 - 14699.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r14698 - 14699.
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Added another fix in r14751.

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                  hiralv Hiral Vora (Inactive) added a comment - Added another fix in r14751.
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  seems to work fine - again, every scaffold is reading as 1000000000 so very hard to see the content

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - seems to work fine - again, every scaffold is reading as 1000000000 so very hard to see the content
                  Hide
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Length issue cannot be fixed.

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                  hiralv Hiral Vora (Inactive) added a comment - Length issue cannot be fixed.
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                  tkanapar Tarun Santosh (Inactive) added a comment -

                  Passed in Mac IGB 7.0.4 (15396)

                  Show
                  tkanapar Tarun Santosh (Inactive) added a comment - Passed in Mac IGB 7.0.4 (15396)

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      ann.loraine Ann Loraine
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                      Dates

                      • Created:
                        Updated:
                        Resolved: