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  1. Bug Repository
  2. BUG-845 Handle multiple CDS in gff3
  3. BUG-864

problem with reading gff3 file

          Details

          • Type: Sub-task
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            The attached file is output from GMAP, a popular alignment program that also predicts genes from alignments.

            When I open it in IGB the attached image is displayed. It should have shown a single gene model with CDSs.

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                Issue Links

                relates to

                Task - A task that needs to be done. BUG-622 File format issues

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  ann.loraine Ann Loraine created issue -
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Project IGB 7.0 [ 10140 ] IGB 7.1 [ 10240 ]
                  Key IGBC-1021 IGBD-251
                  hiralv Hiral Vora (Inactive) made changes -
                  Parent IGBD-250 [ 13875 ]
                  Issue Type Bug [ 1 ] Sub-task [ 5 ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r14751.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r14751.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited

                  looks good, but can NOT select the whole 1st exon by selecting the UTR - each section must be selected individually, with shift.

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                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited looks good, but can NOT select the whole 1st exon by selecting the UTR - each section must be selected individually, with shift.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Selection seems to be working fine for me.

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                  hiralv Hiral Vora (Inactive) added a comment - Selection seems to be working fine for me.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 7.1 [ 10240 ] Bug Repository [ 10030 ]
                  Key IGBD-251 BUG-864
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-622 [ BUG-622 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Tarun Santosh [ tkanapar ]
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                  tkanapar Tarun Santosh (Inactive) added a comment -

                  Passed in Mac IGB 7.0.4 (15396)

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                  tkanapar Tarun Santosh (Inactive) added a comment - Passed in Mac IGB 7.0.4 (15396)
                  tkanapar Tarun Santosh (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Tarun Santosh [ tkanapar ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      ann.loraine Ann Loraine
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                      Dates

                      • Created:
                        Updated:
                        Resolved: