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  1. Bug Repository
  2. BUG-91

"Error loading residues" error using 'Show Genomic Sequence' on cytobands

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None
          • Environment:

            OS X: 10.6
            Java: 1.6.0_24
            IGB SVN: 7811

            Description

            Tested with multiple species (Human and Rat) and after cleaned preferences.

            The user is given the option to Show Genomic Sequence after right clicking on cytobands.
            Doing this causes the residues to load. The following error pops up: "Can not open sequence viewer: Error loading residues"

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-608 Sequence viewer bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  adam Adam Baxter (Inactive) created issue -
                  adam Adam Baxter (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Ann Loraine [ aloraine ] Hiral Vora [ hiralv ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] vikram bishnoi [ vbishnoi ]
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                  vbishnoi vbishnoi added a comment -

                  Resolved.

                  Show
                  vbishnoi vbishnoi added a comment - Resolved.
                  vbishnoi vbishnoi made changes -
                  Assignee vikram bishnoi [ vbishnoi ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited

                  The sequence loads into the main viewer, but I am still getting the same error as far as opening the viewer (version 7876)

                  Even if the sequence is fully loaded before trying to view it, I still get the error.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited The sequence loads into the main viewer, but I am still getting the same error as far as opening the viewer (version 7876) Even if the sequence is fully loaded before trying to view it, I still get the error.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] vikram bishnoi [ vbishnoi ]
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                  vbishnoi vbishnoi added a comment - - edited

                  I am sorry, i forgot to mention the version, this will be present in the latest version(Integrated Genome Browser, version: 6.5 (7885)).

                  Show
                  vbishnoi vbishnoi added a comment - - edited I am sorry, i forgot to mention the version, this will be present in the latest version(Integrated Genome Browser, version: 6.5 (7885)).
                  vbishnoi vbishnoi made changes -
                  Assignee vikram bishnoi [ vbishnoi ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  version 7887, still not working

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - version 7887, still not working
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] vikram bishnoi [ vbishnoi ]
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                  vbishnoi vbishnoi added a comment -

                  I had misunderstood this test case earlier. This has been fixed and i have tested with bands in "Homo Sapiens" and "Rattus"

                  Show
                  vbishnoi vbishnoi added a comment - I had misunderstood this test case earlier. This has been fixed and i have tested with bands in "Homo Sapiens" and "Rattus"
                  vbishnoi vbishnoi made changes -
                  Assignee vikram bishnoi [ vbishnoi ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB6.5 [ 10010 ] Bug Repository [ 10030 ]
                  Key IGB-122 BUG-91
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  david David Norris (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ]
                  david David Norris (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Resolution Fixed [ 1 ]
                  david David Norris (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Katharine Kubiak [ kkubiak ]
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed v9770 Windows

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9770 Windows
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Assignee Katharine Kubiak [ kkubiak ] Anuj Puram [ anuj ]
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                  anuj Anuj Puram (Inactive) added a comment -

                  Passed version 6.7.0 (9791) on Mac

                  Show
                  anuj Anuj Puram (Inactive) added a comment - Passed version 6.7.0 (9791) on Mac
                  anuj Anuj Puram (Inactive) made changes -
                  Assignee Anuj Puram [ anuj ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  smylapur Vineeth Mylapur (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Vineeth Mylapur [ smylapur ]
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                  smylapur Vineeth Mylapur (Inactive) added a comment - - edited

                  Passed 7.0 v(11908) Windows

                  Show
                  smylapur Vineeth Mylapur (Inactive) added a comment - - edited Passed 7.0 v(11908) Windows
                  smylapur Vineeth Mylapur (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Vineeth Mylapur [ smylapur ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-608 [ BUG-608 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Summary "Error loading residues" error using 'Show Genomic Sequence' on bands "Error loading residues" error using 'Show Genomic Sequence' on cytobands
                  Reporter Adam Baxter [ adam ] Alyssa Gulledge [ alyssa ]
                  Description Tested with multiple species (Human and Rat) and after cleaned preferences.

                  The user is given the option to Show Genomic Sequence after right clicking on bands.
                  Doing this causes the residues to load. The following error pops up: "Can not open sequence viewer: Error loading residues"
                  		 Tested with multiple species (Human and Rat) and after cleaned preferences.

                  The user is given the option to Show Genomic Sequence after right clicking on cytobands.
                  Doing this causes the residues to load. The following error pops up: "Can not open sequence viewer: Error loading residues"
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: