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  1. User Support
  2. HELP-18

Ghost DAS and Save Session by name (Dr. Joana Mendes)

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Minor
    • Resolution: Fixed
    • Labels:
      None

      Description

      from: Joana Sequeira Mendes jsequeiramendes@cbm.csic.es
      to: Kyle Suttlemyre <ktsuttlemyre@gmail.com>
      cc: Loraine Labuncc <Ann.Loraine@uncc.edu>
      date: Wed, Mar 19, 2014 at 9:14 AM
      subject: IGB 8.0.2 Support

      Dear Kyle and Lorraine,

      the IGB is still giving some problems:

      • at the beginning, when opening the arabidopsis viwer, two messages pop-up of "Server IGB Das (DAS2)/Bioviz not responding. Disabling it for this session."
      • I realized that version 8.0.2 has a bug when trying to save session, it doesn't let you type/change the name of the session to save on the corresponding window

      Thanks in advance for your help.

      All the best,

      Joana

      PLEASE NOTE MY NEW E-MAIL ADDRESS: jsequeiramendes@cbm.csic.es

      Joana Sequeira Mendes, PhD
      "DNA replication and cell cycle" group
      Centro de Biologia Molecular Severo Ochoa
      C/ Nicolás Cabrera, 1
      Cantoblanco, 28049 Madrid
      Spain

      Tel: +34 911964658 (Lab)
      Mail: jsequeiramendes@cbm.csic.es

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            kyle Kyle Suttlemyre (Inactive) added a comment -

            from: Kyle Suttlemyre ktsuttlemyre@gmail.com
            to: Joana Sequeira Mendes <jsequeiramendes@cbm.csic.es>
            cc: Loraine Labuncc <Ann.Loraine@uncc.edu>
            date: Wed, Mar 19, 2014 at 11:05 AM
            subject: Re: IGB 8.0.2 Support

            Dear Dr. Mendes,
            Thanks for the email. I am going to attempt to reproduce the behavior you are seeing.

            Thanks!

            Kyle Suttlemyre
            Bioinformatics at UNC-Charlotte
            Phone: (704) 32KyleS or (704) 325-9537

            Show
            kyle Kyle Suttlemyre (Inactive) added a comment - from: Kyle Suttlemyre ktsuttlemyre@gmail.com to: Joana Sequeira Mendes <jsequeiramendes@cbm.csic.es> cc: Loraine Labuncc <Ann.Loraine@uncc.edu> date: Wed, Mar 19, 2014 at 11:05 AM subject: Re: IGB 8.0.2 Support Dear Dr. Mendes, Thanks for the email. I am going to attempt to reproduce the behavior you are seeing. Thanks! Kyle Suttlemyre Bioinformatics at UNC-Charlotte Phone: (704) 32KyleS or (704) 325-9537
            Hide
            kyle Kyle Suttlemyre (Inactive) added a comment -

            from: Kyle Suttlemyre ktsuttlemyre@gmail.com
            to: Joana Sequeira Mendes <jsequeiramendes@cbm.csic.es>
            date: Wed, Mar 19, 2014 at 5:39 PM
            subject: Re: IGB 8.0.2 Support

            Hello again,

            I am having difficulty reproducing the events you witnessed.

            For the first event, do you get the two error messages every time you open IGB or just the very first time it is ran?

            For the second event, What operating system are you using?

            Thanks for your feedback!

            Kyle Suttlemyre
            Bioinformatics at UNC-Charlotte
            Phone: (704) 32KyleS or (704) 325-9537

            Show
            kyle Kyle Suttlemyre (Inactive) added a comment - from: Kyle Suttlemyre ktsuttlemyre@gmail.com to: Joana Sequeira Mendes <jsequeiramendes@cbm.csic.es> date: Wed, Mar 19, 2014 at 5:39 PM subject: Re: IGB 8.0.2 Support Hello again, I am having difficulty reproducing the events you witnessed. For the first event, do you get the two error messages every time you open IGB or just the very first time it is ran? For the second event, What operating system are you using? Thanks for your feedback! Kyle Suttlemyre Bioinformatics at UNC-Charlotte Phone: (704) 32KyleS or (704) 325-9537
            Hide
            kyle Kyle Suttlemyre (Inactive) added a comment -

            Joana Sequeira Mendes jsequeiramendes@cbm.csic.es
            to: Kyle Suttlemyre <ktsuttlemyre@gmail.com>
            date: Thu, Apr 3, 2014 at 10:56 AM
            subject: Re: IGB 8.0.2 Support

            Dear Kyle,

            sorry for the late response. I seem to have missed your last email.
            I get the two error messages everytime I open IGB.
            We are using MacOSX 10.6.8

            Also, everytime I load a saved session all tracks are loaded in a random order and I have to put them back in order everytime. Could you optimize this?

            Hope to hear from you soon.

            Best wishes,

            Joana
            PLEASE NOTE MY NEW E-MAIL ADDRESS: jsequeiramendes@cbm.csic.es

            Joana Sequeira Mendes, PhD
            "DNA replication and cell cycle" group
            Centro de Biologia Molecular Severo Ochoa
            C/ Nicolás Cabrera, 1
            Cantoblanco, 28049 Madrid
            Spain

            Tel: +34 911964658 (Lab)
            Mail: jsequeiramendes@cbm.csic.es
            El 3/19/14 10:39 PM, Kyle Suttlemyre escribió:

            Show
            kyle Kyle Suttlemyre (Inactive) added a comment - Joana Sequeira Mendes jsequeiramendes@cbm.csic.es to: Kyle Suttlemyre <ktsuttlemyre@gmail.com> date: Thu, Apr 3, 2014 at 10:56 AM subject: Re: IGB 8.0.2 Support Dear Kyle, sorry for the late response. I seem to have missed your last email. I get the two error messages everytime I open IGB. We are using MacOSX 10.6.8 Also, everytime I load a saved session all tracks are loaded in a random order and I have to put them back in order everytime. Could you optimize this? Hope to hear from you soon. Best wishes, Joana PLEASE NOTE MY NEW E-MAIL ADDRESS: jsequeiramendes@cbm.csic.es Joana Sequeira Mendes, PhD "DNA replication and cell cycle" group Centro de Biologia Molecular Severo Ochoa C/ Nicolás Cabrera, 1 Cantoblanco, 28049 Madrid Spain Tel: +34 911964658 (Lab) Mail: jsequeiramendes@cbm.csic.es El 3/19/14 10:39 PM, Kyle Suttlemyre escribió:
            Hide
            kyle Kyle Suttlemyre (Inactive) added a comment -

            Joana Sequeira Mendes jsequeiramendes@cbm.csic.es
            to: Kyle Suttlemyre <ktsuttlemyre@gmail.com>
            date: Fri, Apr 4, 2014 at 11:30 AM
            subject:

            Dear Kyle,

            Please find attached another version of the server bug... [See attached image Screen shot 2014-04-04 at 5.29.00 PM.png]

            Thanks for your help,

            Joana
            PLEASE NOTE MY NEW E-MAIL ADDRESS: jsequeiramendes@cbm.csic.es

            Joana Sequeira Mendes, PhD
            "DNA replication and cell cycle" group
            Centro de Biologia Molecular Severo Ochoa
            C/ Nicolás Cabrera, 1
            Cantoblanco, 28049 Madrid
            Spain

            Tel: +34 911964658 (Lab)
            Mail: jsequeiramendes@cbm.csic.es
            El 4/3/14 4:56 PM, Joana Sequeira Mendes escribió:

            Show
            kyle Kyle Suttlemyre (Inactive) added a comment - Joana Sequeira Mendes jsequeiramendes@cbm.csic.es to: Kyle Suttlemyre <ktsuttlemyre@gmail.com> date: Fri, Apr 4, 2014 at 11:30 AM subject: Dear Kyle, Please find attached another version of the server bug... [See attached image Screen shot 2014-04-04 at 5.29.00 PM.png] Thanks for your help, Joana PLEASE NOTE MY NEW E-MAIL ADDRESS: jsequeiramendes@cbm.csic.es Joana Sequeira Mendes, PhD "DNA replication and cell cycle" group Centro de Biologia Molecular Severo Ochoa C/ Nicolás Cabrera, 1 Cantoblanco, 28049 Madrid Spain Tel: +34 911964658 (Lab) Mail: jsequeiramendes@cbm.csic.es El 4/3/14 4:56 PM, Joana Sequeira Mendes escribió:
            Hide
            kyle Kyle Suttlemyre (Inactive) added a comment -

            from: Kyle Suttlemyre ktsuttlemyre@gmail.com
            to: Joana Sequeira Mendes <jsequeiramendes@cbm.csic.es>
            date: Mon, Apr 7, 2014 at 11:19 AM
            subject: Re: IGB 8.0.2 Support

            Thanks for the additional information.

            I will see if I can reproduce this on MacOSX 10.6.8

            I will also make a note to talk to the developer about the order of tracks when loading.

            The screen shot that you have sent to me is proper behavior for when IGB is unable to connect to a server. Try again today and see if the error still occurs. Depending on your connection or who runs the server these connections could go in and out over time.

            Best

            Kyle Suttlemyre
            Bioinformatics at UNC-Charlotte
            Phone: (704) 32KyleS or (704) 325-9537

            Show
            kyle Kyle Suttlemyre (Inactive) added a comment - from: Kyle Suttlemyre ktsuttlemyre@gmail.com to: Joana Sequeira Mendes <jsequeiramendes@cbm.csic.es> date: Mon, Apr 7, 2014 at 11:19 AM subject: Re: IGB 8.0.2 Support Thanks for the additional information. I will see if I can reproduce this on MacOSX 10.6.8 I will also make a note to talk to the developer about the order of tracks when loading. The screen shot that you have sent to me is proper behavior for when IGB is unable to connect to a server. Try again today and see if the error still occurs. Depending on your connection or who runs the server these connections could go in and out over time. Best Kyle Suttlemyre Bioinformatics at UNC-Charlotte Phone: (704) 32KyleS or (704) 325-9537
            Hide
            kyle Kyle Suttlemyre (Inactive) added a comment -

            from: Joana Sequeira Mendes jsequeiramendes@cbm.csic.es
            to: Kyle Suttlemyre <ktsuttlemyre@gmail.com>
            date: Mon, Apr 7, 2014 at 1:28 PM
            subject: Re: IGB 8.0.2 Support

            Hi Kyle,

            thanks for the reply.
            The server error has been occurring ever since I contacted the IGB support team, on an almost daily basis. Today included!

            Thanks in advance for your help.

            Best regards,

            Joana
            PLEASE NOTE MY NEW E-MAIL ADDRESS: jsequeiramendes@cbm.csic.es

            Joana Sequeira Mendes, PhD
            "DNA replication and cell cycle" group
            Centro de Biologia Molecular Severo Ochoa
            C/ Nicolás Cabrera, 1
            Cantoblanco, 28049 Madrid
            Spain

            Tel: +34 911964658 (Lab)
            Mail: jsequeiramendes@cbm.csic.es
            El 4/7/14 5:19 PM, Kyle Suttlemyre escribió:

            Show
            kyle Kyle Suttlemyre (Inactive) added a comment - from: Joana Sequeira Mendes jsequeiramendes@cbm.csic.es to: Kyle Suttlemyre <ktsuttlemyre@gmail.com> date: Mon, Apr 7, 2014 at 1:28 PM subject: Re: IGB 8.0.2 Support Hi Kyle, thanks for the reply. The server error has been occurring ever since I contacted the IGB support team, on an almost daily basis. Today included! Thanks in advance for your help. Best regards, Joana PLEASE NOTE MY NEW E-MAIL ADDRESS: jsequeiramendes@cbm.csic.es Joana Sequeira Mendes, PhD "DNA replication and cell cycle" group Centro de Biologia Molecular Severo Ochoa C/ Nicolás Cabrera, 1 Cantoblanco, 28049 Madrid Spain Tel: +34 911964658 (Lab) Mail: jsequeiramendes@cbm.csic.es El 4/7/14 5:19 PM, Kyle Suttlemyre escribió:
            Hide
            kyle Kyle Suttlemyre (Inactive) added a comment -

            from: Kyle Suttlemyre ktsuttlemyre@gmail.com
            to: Joana Sequeira Mendes <jsequeiramendes@cbm.csic.es>
            cc: Loraine Labuncc <Ann.Loraine@uncc.edu>
            date: Mon, Apr 7, 2014 at 5:45 PM
            subject: Re: IGB 8.0.2 Support

            Hello,

            I have had that server turned on in my IGB preferences since ~11:20 and I have been able to connect. If you do not need access to the data on this server you can turn off the connection. To do this from the "Welcome Screen" go to the blue "Configure" link in the bottom left corner. It is next to the words "Available Data". A window will open and "Data Sources" tab should be selected. You may uncheck the "HughesLab" data source there. IGB will save this preference and next time you open IGB you should not see the pop up message.

            Kyle Suttlemyre
            Bioinformatics at UNC-Charlotte
            Phone: (704) 32KyleS or (704) 325-9537

            Show
            kyle Kyle Suttlemyre (Inactive) added a comment - from: Kyle Suttlemyre ktsuttlemyre@gmail.com to: Joana Sequeira Mendes <jsequeiramendes@cbm.csic.es> cc: Loraine Labuncc <Ann.Loraine@uncc.edu> date: Mon, Apr 7, 2014 at 5:45 PM subject: Re: IGB 8.0.2 Support Hello, I have had that server turned on in my IGB preferences since ~11:20 and I have been able to connect. If you do not need access to the data on this server you can turn off the connection. To do this from the "Welcome Screen" go to the blue "Configure" link in the bottom left corner. It is next to the words "Available Data". A window will open and "Data Sources" tab should be selected. You may uncheck the "HughesLab" data source there. IGB will save this preference and next time you open IGB you should not see the pop up message. Kyle Suttlemyre Bioinformatics at UNC-Charlotte Phone: (704) 32KyleS or (704) 325-9537

              People

              • Assignee:
                kyle Kyle Suttlemyre (Inactive)
                Reporter:
                kyle Kyle Suttlemyre (Inactive)
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                  Updated:
                  Resolved: