Details
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Type:
Bug
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Status: To-Do (View Workflow)
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Priority:
Blocker
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Resolution: Unresolved
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Labels:
Description
When I load an annotation file (gff3) using the Windows version of IGB, it does not show the option to show the gene name (gene=) from the gff3 file (as seen in the drop down menu). If I use this same file in the Linux version, it gives me the right option and a few more.
I would like to be able to label by gene name eg. "lysT" instead of this UNKNOWN_SYM65 id.
GFF file in this example region:
AL123456 EMBL gene 923803 923875 . - . ID=gene870;Name=lysT;gbkey=Gene;gene=lysT;gene_biotype=tRNA
AL123456 EMBL tRNA 923803 923875 . - . ID=rna13;Parent=gene870;Note=codon recognized: AAA - lysT - tRNA-Lys - anticodon ttt - length %3D 73;anticodon=(pos:complement(923840..923842));gbkey=tRNA;gene=lysT;product=tRNA-Lys
AL123456 EMBL exon 923803 923875 . - . ID=id50;Parent=rna13;Note=codon recognized: AAA - lysT - tRNA-Lys - anticodon ttt - length %3D 73;anticodon=(pos:complement(923840..923842));gbkey=tRNA;gene=lysT;product=tRNA-Lys
Reporter: Valdir Barth
E-mail: valdirbarth@gmail.com
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Priority | Blocker [ 1 ] | |
| Attachment | LabeledGFF3byGene.png [ 14024 ] |
| Workflow | Loraine Lab Workflow [ 17859 ] | Fall 2019 Workflow Update [ 20468 ] |
| Workflow | Fall 2019 Workflow Update [ 20468 ] | Revised Fall 2019 Workflow Update [ 22660 ] |
| Status | Open [ 1 ] | To-Do [ 10305 ] |