Details
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Type:
Bug
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Status: To-Do (View Workflow)
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Priority:
Blocker
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Resolution: Unresolved
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Labels:
Description
Hi! I am trying to load Escherichia coli str. K-12 substr. MG1655, complete genome GenBank: U00096.3 as my reference genome. I can download the genome from NCBI as a genbank (gbk) or a FASTA but IGB will only let me open the genome as a FASTA. When I do this, IGB only displays the nucleotide sequences and not the gene annotations. I see that IGB will allow me to open fna files but I am not sure how to get that file type. Also, I see IGB has Escherichia coli str. K-12 substr. MG1655 from Jan 2012 as a reference but I couldn't find out what version/ GenBank number this was.
Reporter: Colleen Bianco
E-mail: cbianco2@illinois.edu
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Priority | Blocker [ 1 ] | |
| Attachment | sequence.fasta [ 14028 ] | |
| Attachment | annotations.gb [ 14029 ] | |
| Attachment | chromosome.txt [ 14030 ] | |
| Attachment | AddChromosmeTXT.png [ 14031 ] |
| Workflow | Loraine Lab Workflow [ 17866 ] | Fall 2019 Workflow Update [ 20471 ] |
| Workflow | Fall 2019 Workflow Update [ 20471 ] | Revised Fall 2019 Workflow Update [ 22663 ] |
| Status | Open [ 1 ] | To-Do [ 10305 ] |
| Attachment | AddChromosmeTXT.png [ 14031 ] |
| Attachment | annotations.gb [ 14029 ] |
| Attachment | chromosome.txt [ 14030 ] |
| Attachment | sequence.fasta [ 14028 ] |