Details
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Type:
Bug
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Status: To-Do (View Workflow)
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Resolution: Unresolved
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Labels:
Description
Hello,
I am trying to automatically generate certain annotation files in gff3 format. During this process I want to customize the color. Through the release notes of earlier versions of IGB and the documentation, I was able to see that you accept ucsc-style track lines for gff3 files (with ##track directive).
Unfortunately, the color tag seems to be ignored in the newest IGB version (9.0.2).
If I use the following example (tab separated with empty attribute):
##gff-version 3
##track name="test" color=230,115,200
NC_002163.1 . nucleotide_motif 1 3 . + .
NC_002163.1 . nucleotide_motif 122 124 . + .
....
The track will be named "test" but the color is ignored.
I have tested many different variations, but I was unable to add custom color via the track line. I tested track lines from your documentation and they did not work either.
If this is not a bug, could you please tell me how this works?
Thank you for your help
Reporter: Rick Gelhausen
E-mail: gelhausr@informatik.uni-freiburg.de
Attachments
Issue Links
- relates to
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IGBF-1835 Fix color setting for GFF format
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- To-Do
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