Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Minor
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Resolution: Fixed
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Labels:None
Description
change view mode for bai or tbi semantic zoom does not work
Attachments
Issue Links
- relates to
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IGBF-1920 Visualizing the index
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Description |
- cannot show detail for 207KT...bw because style method not = BioSeq method - change view mode for bai or tbi semantic zoom does not work - 1 - select h sapiens 2 - refseq shows as semantic zoom (default view mode) 3 - right click and change view mode to Annotation now the annotation glyphs show, but they are only two high - Unfloating the graph does not work. |
- cannot show detail for 207KT...bw because style method not = BioSeq method - change view mode for bai or tbi semantic zoom does not work - 1 - select h sapiens 2 - refseq shows as semantic zoom (default view mode) 3 - right click and change view mode to Annotation now the annotation glyphs show, but they are only two high - Unfloating the graph does not work. - y range of tbi and bai semantic zoom is wrong. Read one bin of data file to estimate |
| Description |
- cannot show detail for 207KT...bw because style method not = BioSeq method - change view mode for bai or tbi semantic zoom does not work - 1 - select h sapiens 2 - refseq shows as semantic zoom (default view mode) 3 - right click and change view mode to Annotation now the annotation glyphs show, but they are only two high - Unfloating the graph does not work. - y range of tbi and bai semantic zoom is wrong. Read one bin of data file to estimate |
- cannot show detail for 207KT...bw because style method not = BioSeq method - change view mode for bai or tbi semantic zoom does not work - 1 - select h sapiens 2 - refseq shows as semantic zoom (default view mode) 3 - right click and change view mode to Annotation now the annotation glyphs show, but they are only two high - Unfloating the graph does not work. - y range of tbi and bai semantic zoom is wrong. Read one bin of data file to estimate - load DAS2 track, then switch chr - not gray - load file, switch chr - not gray - can't load sequence - load QL and file, QL does not load, stays gray |
| Description |
- cannot show detail for 207KT...bw because style method not = BioSeq method - change view mode for bai or tbi semantic zoom does not work - 1 - select h sapiens 2 - refseq shows as semantic zoom (default view mode) 3 - right click and change view mode to Annotation now the annotation glyphs show, but they are only two high - Unfloating the graph does not work. - y range of tbi and bai semantic zoom is wrong. Read one bin of data file to estimate - load DAS2 track, then switch chr - not gray - load file, switch chr - not gray - can't load sequence - load QL and file, QL does not load, stays gray |
- cannot show detail for 207KT...bw because style method not = BioSeq method - change view mode for bai or tbi semantic zoom does not work - 1 - select h sapiens 2 - refseq shows as semantic zoom (default view mode) 3 - right click and change view mode to Annotation now the annotation glyphs show, but they are only two high - Unfloating the graph does not work. - y range of tbi and bai semantic zoom is wrong. Read one bin of data file to estimate - load DAS2 track, then switch chr - not gray - load file, switch chr - not gray - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom don't reload SeqSym whenever change viewmode - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
| Description |
- cannot show detail for 207KT...bw because style method not = BioSeq method - change view mode for bai or tbi semantic zoom does not work - 1 - select h sapiens 2 - refseq shows as semantic zoom (default view mode) 3 - right click and change view mode to Annotation now the annotation glyphs show, but they are only two high - Unfloating the graph does not work. - y range of tbi and bai semantic zoom is wrong. Read one bin of data file to estimate - load DAS2 track, then switch chr - not gray - load file, switch chr - not gray - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom don't reload SeqSym whenever change viewmode - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
- change view mode for bai or tbi semantic zoom does not work - y range of tbi and bai semantic zoom is wrong. Read one bin of data file to estimate - load DAS2 track, then switch chr - not gray - load file, switch chr - not gray - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom don't reload SeqSym whenever change viewmode - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
| Description |
- change view mode for bai or tbi semantic zoom does not work - y range of tbi and bai semantic zoom is wrong. Read one bin of data file to estimate - load DAS2 track, then switch chr - not gray - load file, switch chr - not gray - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom don't reload SeqSym whenever change viewmode - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
- change view mode for bai or tbi semantic zoom does not work - load file, switch chr - not gray - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom don't reload SeqSym whenever change viewmode - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
| Description |
- change view mode for bai or tbi semantic zoom does not work - load file, switch chr - not gray - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom don't reload SeqSym whenever change viewmode - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
- change view mode for bai or tbi semantic zoom does not work - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom don't reload SeqSym whenever change viewmode - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
| Description |
- change view mode for bai or tbi semantic zoom does not work - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom don't reload SeqSym whenever change viewmode - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
- change view mode for bai or tbi semantic zoom does not work - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
| Description |
- change view mode for bai or tbi semantic zoom does not work - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
- change view mode for bai or tbi semantic zoom does not work - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom handle +/- strand |
| Description |
- change view mode for bai or tbi semantic zoom does not work - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom handle +/- strand |
- change view mode for bai or tbi semantic zoom does not work - load QL and file, QL does not load, stays gray - semantic zoom handle +/- strand |
| Description |
- change view mode for bai or tbi semantic zoom does not work - load QL and file, QL does not load, stays gray - semantic zoom handle +/- strand |
- change view mode for bai or tbi semantic zoom does not work - semantic zoom handle +/- strand |
| Summary | view mode bugs | change view mode for bai or tbi semantic zoom does not work |
| Description |
- change view mode for bai or tbi semantic zoom does not work - semantic zoom handle +/- strand |
change view mode for bai or tbi semantic zoom does not work |
fixed
rev 12303
| Assignee | Lance Frohman [ lfrohman ] | Alyssa Gulledge [ alyssa ] |
| Assignee | Alyssa Gulledge [ alyssa ] | Katharine Kubiak [ kkubiak ] |
Windows v12307
For tbi files is there supposed to be a "Semantic Zoom" and a "tbi_semantic_zoom" in the View Mode drop down box?
| Assignee | Katharine Kubiak [ kkubiak ] | Lance Frohman [ lfrohman ] |
yes, tbi_semantic_zoom will display an estimated depth graph calculated from
the .tbi index, even when no data is loaded. For very large files, this is useful,
because it is very fast to calculate, the user can see depth for the chr right away,
without having to load, wait, and maybe get an out of memory exception.
The regular Semantic Zoom uses the real depth graph calculated from the annotations,
so the data must be already loaded for this.
Okay that makes sense, cool. Should we change the name from tbi_semantic_zoom to TBI Semantic Zoom?
And it seems to be working fine
Windows v12309
| Assignee | Lance Frohman [ lfrohman ] | Katharine Kubiak [ kkubiak ] |
| Status | Open [ 1 ] | Resolved [ 5 ] |
| Assignee | Katharine Kubiak [ kkubiak ] | |
| Resolution | Fixed [ 1 ] |
| Status | Resolved [ 5 ] | Closed [ 6 ] |
All bugs related to gray are fixed.