Details
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Type: Bug
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Status: Closed (View Workflow)
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Priority: Minor
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Resolution: Fixed
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Labels:None
Description
change view mode for bai or tbi semantic zoom does not work
Attachments
Issue Links
- relates to
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IGBF-1920 Visualizing the index
- Closed
Activity
Lance Frohman (Inactive)
created issue -
Lance Frohman (Inactive)
made changes -
Field | Original Value | New Value |
---|---|---|
Description |
- cannot show detail for 207KT...bw because style method not = BioSeq method - change view mode for bai or tbi semantic zoom does not work - 1 - select h sapiens 2 - refseq shows as semantic zoom (default view mode) 3 - right click and change view mode to Annotation now the annotation glyphs show, but they are only two high - Unfloating the graph does not work. |
- cannot show detail for 207KT...bw because style method not = BioSeq method - change view mode for bai or tbi semantic zoom does not work - 1 - select h sapiens 2 - refseq shows as semantic zoom (default view mode) 3 - right click and change view mode to Annotation now the annotation glyphs show, but they are only two high - Unfloating the graph does not work. - y range of tbi and bai semantic zoom is wrong. Read one bin of data file to estimate |
Lance Frohman (Inactive)
made changes -
Description |
- cannot show detail for 207KT...bw because style method not = BioSeq method - change view mode for bai or tbi semantic zoom does not work - 1 - select h sapiens 2 - refseq shows as semantic zoom (default view mode) 3 - right click and change view mode to Annotation now the annotation glyphs show, but they are only two high - Unfloating the graph does not work. - y range of tbi and bai semantic zoom is wrong. Read one bin of data file to estimate |
- cannot show detail for 207KT...bw because style method not = BioSeq method - change view mode for bai or tbi semantic zoom does not work - 1 - select h sapiens 2 - refseq shows as semantic zoom (default view mode) 3 - right click and change view mode to Annotation now the annotation glyphs show, but they are only two high - Unfloating the graph does not work. - y range of tbi and bai semantic zoom is wrong. Read one bin of data file to estimate - load DAS2 track, then switch chr - not gray - load file, switch chr - not gray - can't load sequence - load QL and file, QL does not load, stays gray |
Lance Frohman (Inactive)
made changes -
Description |
- cannot show detail for 207KT...bw because style method not = BioSeq method - change view mode for bai or tbi semantic zoom does not work - 1 - select h sapiens 2 - refseq shows as semantic zoom (default view mode) 3 - right click and change view mode to Annotation now the annotation glyphs show, but they are only two high - Unfloating the graph does not work. - y range of tbi and bai semantic zoom is wrong. Read one bin of data file to estimate - load DAS2 track, then switch chr - not gray - load file, switch chr - not gray - can't load sequence - load QL and file, QL does not load, stays gray |
- cannot show detail for 207KT...bw because style method not = BioSeq method - change view mode for bai or tbi semantic zoom does not work - 1 - select h sapiens 2 - refseq shows as semantic zoom (default view mode) 3 - right click and change view mode to Annotation now the annotation glyphs show, but they are only two high - Unfloating the graph does not work. - y range of tbi and bai semantic zoom is wrong. Read one bin of data file to estimate - load DAS2 track, then switch chr - not gray - load file, switch chr - not gray - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom don't reload SeqSym whenever change viewmode - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
Lance Frohman (Inactive)
made changes -
Description |
- cannot show detail for 207KT...bw because style method not = BioSeq method - change view mode for bai or tbi semantic zoom does not work - 1 - select h sapiens 2 - refseq shows as semantic zoom (default view mode) 3 - right click and change view mode to Annotation now the annotation glyphs show, but they are only two high - Unfloating the graph does not work. - y range of tbi and bai semantic zoom is wrong. Read one bin of data file to estimate - load DAS2 track, then switch chr - not gray - load file, switch chr - not gray - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom don't reload SeqSym whenever change viewmode - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
- change view mode for bai or tbi semantic zoom does not work - y range of tbi and bai semantic zoom is wrong. Read one bin of data file to estimate - load DAS2 track, then switch chr - not gray - load file, switch chr - not gray - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom don't reload SeqSym whenever change viewmode - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
Lance Frohman (Inactive)
made changes -
Description |
- change view mode for bai or tbi semantic zoom does not work - y range of tbi and bai semantic zoom is wrong. Read one bin of data file to estimate - load DAS2 track, then switch chr - not gray - load file, switch chr - not gray - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom don't reload SeqSym whenever change viewmode - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
- change view mode for bai or tbi semantic zoom does not work - load file, switch chr - not gray - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom don't reload SeqSym whenever change viewmode - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
Lance Frohman (Inactive)
made changes -
Description |
- change view mode for bai or tbi semantic zoom does not work - load file, switch chr - not gray - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom don't reload SeqSym whenever change viewmode - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
- change view mode for bai or tbi semantic zoom does not work - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom don't reload SeqSym whenever change viewmode - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
Lance Frohman (Inactive)
made changes -
Description |
- change view mode for bai or tbi semantic zoom does not work - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom don't reload SeqSym whenever change viewmode - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
- change view mode for bai or tbi semantic zoom does not work - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
Lance Frohman (Inactive)
made changes -
Description |
- change view mode for bai or tbi semantic zoom does not work - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom handle +/- strand - semantic zoom .tbi/.bai scale is wrong, get one block, count reads to relate to our glyph. ratio = # reads / U offset delta. |
- change view mode for bai or tbi semantic zoom does not work - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom handle +/- strand |
Lance Frohman (Inactive)
made changes -
Description |
- change view mode for bai or tbi semantic zoom does not work - can't load sequence - load QL and file, QL does not load, stays gray - semantic zoom handle +/- strand |
- change view mode for bai or tbi semantic zoom does not work - load QL and file, QL does not load, stays gray - semantic zoom handle +/- strand |
Lance Frohman (Inactive)
made changes -
Description |
- change view mode for bai or tbi semantic zoom does not work - load QL and file, QL does not load, stays gray - semantic zoom handle +/- strand |
- change view mode for bai or tbi semantic zoom does not work - semantic zoom handle +/- strand |
Lance Frohman (Inactive)
made changes -
Summary | view mode bugs | change view mode for bai or tbi semantic zoom does not work |
Description |
- change view mode for bai or tbi semantic zoom does not work - semantic zoom handle +/- strand |
change view mode for bai or tbi semantic zoom does not work |
Lance Frohman (Inactive)
made changes -
Assignee | Lance Frohman [ lfrohman ] | Alyssa Gulledge [ alyssa ] |
Hiral Vora (Inactive)
made changes -
Assignee | Alyssa Gulledge [ alyssa ] | Katharine Kubiak [ kkubiak ] |
Katharine Kubiak (Inactive)
made changes -
Assignee | Katharine Kubiak [ kkubiak ] | Lance Frohman [ lfrohman ] |
Katharine Kubiak (Inactive)
made changes -
Assignee | Lance Frohman [ lfrohman ] | Katharine Kubiak [ kkubiak ] |
Katharine Kubiak (Inactive)
made changes -
Status | Open [ 1 ] | Resolved [ 5 ] |
Assignee | Katharine Kubiak [ kkubiak ] | |
Resolution | Fixed [ 1 ] |
Katharine Kubiak (Inactive)
made changes -
Status | Resolved [ 5 ] | Closed [ 6 ] |
Ann Loraine
made changes -