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  1. IGB
  2. IGBF-1401

Add Chlorocebus sabaeus ("green monkey") to IGB quickload

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
        • Story Points:
          1
        • Sprint:
          Winter 2018 Sprint 3, Spring 2019 Sprint 1, Spring 2019 Sprint 2, Spring 2019 Sprint 3

          Description

          A user would like us to add green monkey (Chlorocebus sabaeus) to IGB Quickload.

          We should get the sequence data (as usual) from UCSC but get the reference gene models from the GFF available from NCBI as he mentioned below. It would be more convenient to get the gene models from UCSC as usual, but I don't see them listed in the table browser. I think what may have happened is that NCBI has annotated the genome but UCSC has not yet imported the annotations into their database.

            Attachments

              Issue Links

              relates to

              Bug - A problem which impairs or prevents the functions of the product. HELP-306 New reference genome (Chlorocebus sabaeus)

              • Major - Major loss of function.
              • Closed

              New Feature - A new feature of the product, which has yet to be developed. IGBF-1522 Write program to convert EnsGene table bed12 to bed14

              • Major - Major loss of function.
              • Closed

              New Feature - A new feature of the product, which has yet to be developed. IGBF-1523 Add vervet (green monkey) to IGB species.txt and synonyms.txt files

              • Major - Major loss of function.
              • Closed

              Bug - A problem which impairs or prevents the functions of the product. HELP-306 New reference genome (Chlorocebus sabaeus)

              • Major - Major loss of function.
              • Closed

                Activity

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                ieclabau Ivory Blakley (Inactive) created issue -
                ieclabau Ivory Blakley (Inactive) made changes -
                Field Original Value New Value
                Rank Ranked higher
                ieclabau Ivory Blakley (Inactive) made changes -
                Sprint Fall 2018 Sprint 2 [ 52 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Rank Ranked lower
                ieclabau Ivory Blakley (Inactive) made changes -
                Status Open [ 1 ] In Progress [ 3 ]
                mason Mason Meyer (Inactive) made changes -
                Link This issue relates to HELP-306 [ HELP-306 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Status In Progress [ 3 ] Open [ 1 ]
                ann.loraine Ann Loraine made changes -
                Story Points 1
                Sprint Fall 2018 Sprint 2 [ 52 ]
                Labels Intermediate
                Assignee Ivory Blakley [ ieclabau ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 2018 Sprint 3 [ 53 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Fall 2018 Sprint 3 [ 53 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked lower
                ieclabau Ivory Blakley (Inactive) made changes -
                Sprint Fall 2018 Sprint 3 [ 53 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Rank Ranked higher
                ieclabau Ivory Blakley (Inactive) made changes -
                Sprint Fall 2018 Sprint 3 [ 53 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Status Open [ 1 ] Open [ 1 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to HELP-306 [ HELP-306 ]
                ann.loraine Ann Loraine made changes -
                Sprint Winter 2018 Sprint 3 [ 58 ]
                Assignee Jill Jenkins [ jill ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                Jill Jill Jenkins (Inactive) made changes -
                Status Open [ 1 ] In Progress [ 3 ]
                Jill Jill Jenkins (Inactive) made changes -
                Assignee Jill Jenkins [ jill ] Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Jill Jenkins [ jill ]
                ann.loraine Ann Loraine made changes -
                Status In Progress [ 3 ] Open [ 1 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Winter 2018 Sprint 3 [ 58 ] Winter 2018 Sprint 3, Spring 2019 Sprint 1 [ 58, 59 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-1522 [ IGBF-1522 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-1523 [ IGBF-1523 ]
                Jill Jill Jenkins (Inactive) made changes -
                Status Open [ 1 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Sprint Winter 2018 Sprint 3, Spring 2019 Sprint 1 [ 58, 59 ] Winter 2018 Sprint 3, Spring 2019 Sprint 1, Spring 2019 Sprint 2 [ 58, 59, 60 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Status In Progress [ 3 ] Open [ 1 ]
                Jill Jill Jenkins (Inactive) made changes -
                Status Open [ 1 ] In Progress [ 3 ]
                Jill Jill Jenkins (Inactive) made changes -
                Assignee Jill Jenkins [ jill ]
                Jill Jill Jenkins (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Sprint Winter 2018 Sprint 3, Spring 2019 Sprint 1, Spring 2019 Sprint 2 [ 58, 59, 60 ] Winter 2018 Sprint 3, Spring 2019 Sprint 1, Spring 2019 Sprint 2, Spring 2019 Sprint 3 [ 58, 59, 60, 61 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] Reviewing [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Resolution Done [ 10000 ]
                Status Reviewing [ 10301 ] Closed [ 6 ]
                ann.loraine Ann Loraine made changes -
                Workflow Loraine Lab Workflow [ 18105 ] Fall 2019 Workflow Update [ 19941 ]
                ann.loraine Ann Loraine made changes -
                Workflow Fall 2019 Workflow Update [ 19941 ] Revised Fall 2019 Workflow Update [ 22061 ]
                nfreese Nowlan Freese made changes -
                Assignee Ann Loraine [ aloraine ]
                nfreese Nowlan Freese made changes -
                Assignee Ann Loraine [ aloraine ] Jill Jenkins [ jill ]

                  People

                  • Assignee:
                    Jill Jill Jenkins (Inactive)
                    Reporter:
                    ieclabau Ivory Blakley (Inactive)
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: