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  1. IGB
  2. IGBF-2103

Load bai from URL

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          2
        • Epic Link:
        • Sprint:
          Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec

          Description

          Situation: The current implementation of index hacking produces a bedgraph file that is written to the same location as the bai file. As this requires write access, it is not possible to load a bai file from a URL.

          Task: This issue is blocked by IGBF-2101, which will create a graph sym object from the BAI file without having to write out a bedgraph file first. For this issue, investigate and implement any additional changes required to enable loading a BAI file from a URL.

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              Issue Links

              is blocked by

              Task - A task that needs to be done. IGBF-2101 Produce Graph Sym from BAI

              • Blocker - Blocks development and/or testing work, production could not run.
              • Closed

                Activity

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                svallapu Sai Charan Reddy Vallapureddy (Inactive) added a comment -

                It is fixed in IGBF-2101

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                svallapu Sai Charan Reddy Vallapureddy (Inactive) added a comment - It is fixed in IGBF-2101
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                svallapu Sai Charan Reddy Vallapureddy (Inactive) added a comment -

                Pull Request submitted. Check IGBF-2101

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                svallapu Sai Charan Reddy Vallapureddy (Inactive) added a comment - Pull Request submitted. Check IGBF-2101
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                nfreese Nowlan Freese added a comment -

                Check comments for IGBF-2101.

                Loaded correctly from URL (with exception of some pacbio files).

                Closing issue.

                Show
                nfreese Nowlan Freese added a comment - Check comments for IGBF-2101 . Loaded correctly from URL (with exception of some pacbio files). Closing issue.

                  People

                  • Assignee:
                    svallapu Sai Charan Reddy Vallapureddy (Inactive)
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
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                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: