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  1. IGB
  2. IGBF-2103

Load bai from URL

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          2
        • Epic Link:
        • Sprint:
          Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec

          Description

          Situation: The current implementation of index hacking produces a bedgraph file that is written to the same location as the bai file. As this requires write access, it is not possible to load a bai file from a URL.

          Task: This issue is blocked by IGBF-2101, which will create a graph sym object from the BAI file without having to write out a bedgraph file first. For this issue, investigate and implement any additional changes required to enable loading a BAI file from a URL.

            Attachments

              Issue Links

              is blocked by

              Task - A task that needs to be done. IGBF-2101 Produce Graph Sym from BAI

              • Blocker - Blocks development and/or testing work, production could not run.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                nfreese Nowlan Freese created issue -
                nfreese Nowlan Freese made changes -
                Field Original Value New Value
                Epic Link IGBF-1919 [ 18010 ]
                nfreese Nowlan Freese made changes -
                Link This issue is blocked by IGBF-2101 [ IGBF-2101 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 7 : 11 Nov to 22 Nov [ 78 ] Fall 7 : 11 Nov to 22 Nov, Fall 8 : 25 Nov to 6 Dec [ 78, 79 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Assignee Sai Charan Reddy Vallapureddy [ svallapu ]
                Hide
                Permalink
                svallapu Sai Charan Reddy Vallapureddy (Inactive) added a comment -

                It is fixed in IGBF-2101

                Show
                svallapu Sai Charan Reddy Vallapureddy (Inactive) added a comment - It is fixed in IGBF-2101
                svallapu Sai Charan Reddy Vallapureddy (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Assignee Sai Charan Reddy Vallapureddy [ svallapu ] Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Sai Charan Reddy Vallapureddy [ svallapu ]
                Hide
                Permalink
                svallapu Sai Charan Reddy Vallapureddy (Inactive) added a comment -

                Pull Request submitted. Check IGBF-2101

                Show
                svallapu Sai Charan Reddy Vallapureddy (Inactive) added a comment - Pull Request submitted. Check IGBF-2101
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                nfreese Nowlan Freese made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                nfreese Nowlan Freese made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                nfreese Nowlan Freese made changes -
                Assignee Sai Charan Reddy Vallapureddy [ svallapu ] Nowlan Freese [ nfreese ]
                Hide
                Permalink
                nfreese Nowlan Freese added a comment -

                Check comments for IGBF-2101.

                Loaded correctly from URL (with exception of some pacbio files).

                Closing issue.

                Show
                nfreese Nowlan Freese added a comment - Check comments for IGBF-2101 . Loaded correctly from URL (with exception of some pacbio files). Closing issue.
                nfreese Nowlan Freese made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Sai Charan Reddy Vallapureddy [ svallapu ]

                  People

                  • Assignee:
                    svallapu Sai Charan Reddy Vallapureddy (Inactive)
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: