Details
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Type:
Bug
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Status: Ready for Pull Request (View Workflow)
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 3
Description
When trying to export an image from IGB 9.1.0 on windows, specifying 'whole frame' and saving as svg, clicking save does not close the export window, and an image file is created, but it is missing all elements except the menu bar and part of the bottom bar. I have attached the svg and a screenshot of it for easy viewing.
I tried reseting preferences and deleting the IGB folder, but the issue persists. I tested v9.0.2 on a naive system and still experience the issue.
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1765 [ 17855 ] |
| Attachment | whole-frame-svg-windows-screenshot.png [ 14512 ] | |
| Attachment | whole-frame-svg-windows.svg [ 14513 ] |
| Description |
When trying to export an image from IGB 9.1.0 on windows, specifying 'whole frame' and saving as svg, clicking save does not close the export window, and an image file is created, but it is missing all elements except the menu bar and the footer bar. I have attached the svg and a screenshot of it for easy viewing.
I tried reseting preferences and deleting the IGB folder, but the issue persists. I tested v9.0.2 on a naive system and still experience the issue. |
When trying to export an image from IGB 9.1.0 on windows, specifying 'whole frame' and saving as svg, clicking save does not close the export window, and an image file is created, but it is missing all elements except the menu bar and part of the bottom bar. I have attached the svg and a screenshot of it for easy viewing.
I tried reseting preferences and deleting the IGB folder, but the issue persists. I tested v9.0.2 on a naive system and still experience the issue. |
| Attachment | console-output.png [ 14514 ] |
| Sprint | Fall 7 : 11 Nov to 22 Nov [ 78 ] |
| Rank | Ranked higher |
| Fix Version/s | 9.1.0 Major Release [ 10601 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Resolution | Done [ 10000 ] | |
| Status | Closed [ 6 ] | To-Do [ 10305 ] |
| Sprint | Spring 3 [ 212 ] | |
| Assignee | Pranav Bhatia [ pbhatia1 ] |
UPDATE
I am curious whether the change in svg library implemented in IGBF-4081 would fix the issue with whole frame export of svg images on Windows. Note that you will need to re-enable save as svg on whole frame for Windows in order to test (see IGBF-2315).
Paige has also identified the following tickets for svg on Windows. DB-91 would be interesting to test as well.
- HELP-273 - Trouble opening saved SVG files on Windows
DB-24- NullPointerException when exporting Whole Frame SVG on WindowsDB-91- snapshot command line not working for SVG files on Windows
UPDATE
The above issues appear to be resolved.
Task:
- Enable (on a branch) SVG whole frame export on windows and create an installer for this branch. (See comment above for the relevant commit where the export function was de-activated for windows only)
- Attempt to export whole frame image on Windows, observe whether the svg image is now produced without an error (e.g., NullPointerException) being generated (see logs)
Be sure to test the three scenarios from the three tickets linked above.
| Assignee | Pranav Bhatia [ pbhatia1 ] |
| Assignee | Pranav Bhatia [ pbhatia1 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
To test the exporting whole frame svg issue on Windows, we have created two branches.
IGBF-2143 - Enabled selecting 'Whole frame' with the new SVG export library. Download For Windows
release-10.1.0-2143 - Enabled selecting 'Whole frame' in the older IGB version. (Old SVG export library). Download For Windows
Reverted De-activate save as svg on whole frame for Windows platform
Link to Downloads folder - https://bitbucket.org/pranavbhatia1999/integrated-genome-browser/downloads/
Windows file name - IGB-windows-amd64-IGBF-2143-2.exe
MacOS file name - IGB-macos-universal-IGBF-2143-2.dmg
| Assignee | Pranav Bhatia [ pbhatia1 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Nowlan Freese [ nfreese ] |
Tested on Windows using Pranav's IGBF-2143-2 branch and comparing the results to his release-10.1.0-2143 (release-10.1.0-2143 has whole frame export for svg enabled on Windows, but is otherwise just IGB 10.1.0 release).
Was able to export whole frame svg on Windows. The svg file opened successfully in Inkscape and was able to be modified.
Ready for pull request.
| Assignee | Nowlan Freese [ nfreese ] | Pranav Bhatia [ pbhatia1 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
This is a long standing issue with exporting whole frame images as SVG. Previously we disabled whole frame SVG exporting, but enabled to allow users who can get it to work to continue using it.