Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-2197

Investigate: Graph files grayed out

        Details

        • Type: Bug
        • Status: To-Do (View Workflow)
        • Priority: Minor
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Description

          Situation: Observed odd behavior when loading bedgraph files for a whole chromosome. Steps to reproduce the issue are below. In short, loading a bedgraph across a whole chromosome, then zooming in to the end of the chromosome causes the track to appear grayed out, as if it were not loaded.

          Observed in 9.0.2 and 9.1.2

          To reproduce:
          Start IGB
          Select Arabidopsis Genome
          Select Data Access tab > Available Data > RNA-Seq > ant ail6 SRP062420 > Graph > Ler 1 coverage
          Click Load Data (make sure you are zoomed all the way out, so that you can see the full chromosome).
          Zoom in to Chr1:30,420,808-30,427,671
          Grab the horizontal slider and move it to the left, and then move it all the way to the right.
          Click Load Data (you should be zoomed in, with the horizontal slider moved all the way to the right).
          The Ler 1 coverage track should now be gray, as if the data were not loaded.

            Attachments

              Issue Links

              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-1147 better bedgraph formatting

              • Major - Major loss of function.
              • In Progress

                Activity

                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                Next steps:

                • Confirm this issue still exists.
                • Determine if the same issue appears with other graph files? Test several and list the ones you have tested in the comments below. Provide sufficient detail on the files and their location to enable someone else to open and load the same files.
                Show
                ann.loraine Ann Loraine added a comment - Next steps: Confirm this issue still exists. Determine if the same issue appears with other graph files? Test several and list the ones you have tested in the comments below. Provide sufficient detail on the files and their location to enable someone else to open and load the same files.

                  People

                  • Assignee:
                    Unassigned
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated: