Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-2210

Investigate Index Hacking discrepancies

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          1
        • Epic Link:
        • Sprint:
          Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan

          Description

          The bedgraph is from estimate coverage. Compare it to the bai file loaded in IGB. (Human 2009 genome).

            Attachments

            1. 55001608268385A.bam.bai
              8.46 MB
              Nowlan Freese
            2. 55001608268385A.bedgraph
              5.75 MB
              Nowlan Freese
            3. 55001608268385A-JVAR_output.png
              89 kB
              Nowlan Freese
            4. igb.png
              17 kB
              Nowlan Freese
            5. sorted.sam
              1 kB
              Nowlan Freese
            6. unsorted.sam
              1 kB
              Nowlan Freese

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-2220 Check for bam header

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-2221 Compare bin sizes to chromosome sizes

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-2269 Use bam header to sort bai data

              • Major - Major loss of function.
              • Closed

                Activity

                No work has yet been logged on this issue.

                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: