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  1. IGB
  2. IGBF-2210

Investigate Index Hacking discrepancies

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          1
        • Epic Link:
        • Sprint:
          Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan

          Description

          The bedgraph is from estimate coverage. Compare it to the bai file loaded in IGB. (Human 2009 genome).

            Attachments

            1. unsorted.sam
              1 kB
            2. sorted.sam
              1 kB
            3. igb.png
              igb.png
              17 kB
            4. 55001608268385A-JVAR_output.png
              55001608268385A-JVAR_output.png
              89 kB
            5. 55001608268385A.bedgraph
              5.75 MB
            6. 55001608268385A.bam.bai
              8.46 MB

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-2220 Check for bam header

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-2221 Compare bin sizes to chromosome sizes

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-2269 Use bam header to sort bai data

              • Major - Major loss of function.
              • Closed

                Activity

                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
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                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: