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  1. IGB
  2. IGBF-2210

Investigate Index Hacking discrepancies

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          1
        • Epic Link:
        • Sprint:
          Fall 9 : 9 Dec to 20 Dec, Spring 1 : 25 Dec to 17 Jan

          Description

          The bedgraph is from estimate coverage. Compare it to the bai file loaded in IGB. (Human 2009 genome).

            Attachments

            1. 55001608268385A.bam.bai
              8.46 MB
            2. 55001608268385A.bedgraph
              5.75 MB
            3. 55001608268385A-JVAR_output.png
              55001608268385A-JVAR_output.png
              89 kB
            4. igb.png
              igb.png
              17 kB
            5. sorted.sam
              1 kB
            6. unsorted.sam
              1 kB

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-2220 Check for bam header

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-2221 Compare bin sizes to chromosome sizes

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-2269 Use bam header to sort bai data

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                nfreese Nowlan Freese created issue -
                nfreese Nowlan Freese made changes -
                Field Original Value New Value
                Epic Link IGBF-1919 [ 18010 ]
                nfreese Nowlan Freese made changes -
                Sprint Fall 9 : 9 Dec to 20 Dec [ 80 ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 9 : 9 Dec to 20 Dec [ 80 ] Fall 9 : 9 Dec to 20 Dec, Spring 1 : 6 Jan to 17 Jan [ 80, 84 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Attachment igb.png [ 14578 ]
                nfreese Nowlan Freese made changes -
                Attachment 55001608268385A-JVAR_output.png [ 14579 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                nfreese Nowlan Freese made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                nfreese Nowlan Freese made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                nfreese Nowlan Freese made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-2220 [ IGBF-2220 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-2221 [ IGBF-2221 ]
                nfreese Nowlan Freese made changes -
                Attachment sorted.sam [ 14580 ]
                Attachment unsorted.sam [ 14581 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-2269 [ IGBF-2269 ]

                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: