Details
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Type: Task
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 3 : 17 Feb to 28 Feb, Spring 4 : 2 Mar to 13 Mar
Description
When a user opens the Xenopus tropicalis genome, several popups appear that say:
"The file contains data for too many seuence; some may not be shown."
Do not show this message.
Branch with changes: https://bitbucket.org/nfreese/nowlanfork-igb/branch/IGBF-2270-manySeqMessage
To test:
In IGB, open Xenopus tropicalis Nov 2009. The console should log the warning:
"The file contains data for too many sequences; some may not be shown. If this is a problem, please compress and index the file using tabix."
No popups regarding the warning should occur.
I changed the handling of the issue so that instead of presenting the user with a popup it is logged to the console.
There seems to be several things going on with this issue.
1) The X tropicalis Nov 2009 refgene file (X_tropicalis_Nov_2009_refGene.bed.gz) is gzipped, but does not have a tabix index.
2) This issue is related to https://jira.transvar.org/browse/IGBF-33. However,
IGBF-33did not fully address the original issue, which was meant to be addressed by additional refactoring that never occurred (https://jira.transvar.org/browse/DB-166).