Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-2291

Upgrade JDK version to 1.8.0.241 for loraine lab java repositories

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          1.5
        • Epic Link:
        • Sprint:
          Spring 5 : 16 Mar to 27 Mar, Spring 6 : 30 Mar to Apr 10, Spring 7 : 13 Apr to 24 Apr, Spring 8 : 24 Apr to 8 May, Spring 8 : 11 May to 25 May, Spring 9 : 25 May to 8 Jun, Summer 1: 8 Jun - 19 Jun, Summer 2: 22 Jun - 3 Jul

          Description

          Upgrade JDK version to 1.8.0.241 for all the loraine lab java repositories that are using bitbucket pipelines.

          Change the image tag name in bitbucket pipeline and install 4j files.

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              Issue Links

              blocks

              Task - A task that needs to be done. IGBF-2280 Update IGB docker image to use latest JDK 1.8 - release 241

              • Major - Major loss of function.
              • Closed
              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-2357 Fix failed test case

              • Major - Major loss of function.
              • Closed

                Activity

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                Permalink
                ann.loraine Ann Loraine added a comment -

                Pull changes and now the fork builds. Moving to closed.

                Show
                ann.loraine Ann Loraine added a comment - Pull changes and now the fork builds. Moving to closed.
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                ann.loraine Ann Loraine added a comment -

                To fix, Loraine needs to pull changes from main repo into this fork.

                Show
                ann.loraine Ann Loraine added a comment - To fix, Loraine needs to pull changes from main repo into this fork.
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                pbadzuh Philip Badzuh (Inactive) added a comment - - edited

                All projects were successfully built, except for 'igb-for-testing-app-workflow', which fails at genometry tests, with the following exception:

                [ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.19:test (default-test) on project genometry: There are test failures.

                All project except the above that failed to build can be successfully installed using IGB app manager. Tested on macOS

                Update: The error seems to the same one that was fixed in IGBF-2357. However, the repo below is behind the main IGB repo containing the merged fix.

                https://bitbucket.org/lorainelab/igb-for-testing-app-workflow/src/Mock-rel-9.1.0/

                Show
                pbadzuh Philip Badzuh (Inactive) added a comment - - edited All projects were successfully built, except for 'igb-for-testing-app-workflow', which fails at genometry tests, with the following exception: [ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.19:test (default-test) on project genometry: There are test failures. All project except the above that failed to build can be successfully installed using IGB app manager. Tested on macOS Update: The error seems to the same one that was fixed in IGBF-2357 . However, the repo below is behind the main IGB repo containing the merged fix. https://bitbucket.org/lorainelab/igb-for-testing-app-workflow/src/Mock-rel-9.1.0/
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                ann.loraine Ann Loraine added a comment -

                Command socket merged.
                Moving to "Ready for Testing" as all PRs are now merged to their respective master branches.

                Show
                ann.loraine Ann Loraine added a comment - Command socket merged. Moving to "Ready for Testing" as all PRs are now merged to their respective master branches.
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                noor91zahara Noor Zahara (Inactive) added a comment -

                I have removed the git.properties file

                Show
                noor91zahara Noor Zahara (Inactive) added a comment - I have removed the git.properties file
                6 older comments

                  People

                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    noor91zahara Noor Zahara (Inactive)
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                    Dates

                    • Created:
                      Updated:
                      Resolved: