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  1. IGB
  2. IGBF-2548

Investigate: Why do wheat gene models fail to load

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          See error report in IGBF-2333 for problem description.

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              relates to

              New Feature - A new feature of the product, which has yet to be developed. IGBF-2538 Support CSI tabix index for very large genomes

              • Major - Major loss of function.
              • To-Do

              Task - A task that needs to be done. IGBF-2333 Add wheat genome to IGB quickload system

              • Major - Major loss of function.
              • Closed

                Activity

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                ann.loraine Ann Loraine added a comment - - edited

                Modified quickload to not use a compressed file for reference genomes. Edited annots.xml as follows:

                <files>
  <file
    name="T_aestivum_Aug_2018.bed"
    title="Gene models"
    description="Gene models from Ensembl 48"
    url="T_aestivum_Aug_2018"
    load_hint="Whole Sequence"
    foreground="000000"
    name_size="14"
    show2tracks="true"
    direction_type="arrow"
  />
</files>

                This solved the problem.

                Show
                ann.loraine Ann Loraine added a comment - - edited Modified quickload to not use a compressed file for reference genomes. Edited annots.xml as follows: <files> <file name= "T_aestivum_Aug_2018.bed" title= "Gene models" description= "Gene models from Ensembl 48" url= "T_aestivum_Aug_2018" load_hint= "Whole Sequence" foreground= "000000" name_size= "14" show2tracks= " true " direction_type= "arrow" /> </files> This solved the problem.

                  People

                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    ann.loraine Ann Loraine
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                    • Created:
                      Updated:
                      Resolved: