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  1. IGB
  2. IGBF-2623

Test ProtAnnot Subsystem - Linux

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

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            Issue Links

            relates to

            Task - A task that needs to be done. IGBF-2656 Fix problems with ProtAnnot

            • Major - Major loss of function.
            • Closed

            Task - A task that needs to be done. IGBF-2621 Test ProtAnnot Subsystem - MacOS

            • Major - Major loss of function.
            • Closed

            Task - A task that needs to be done. IGBF-2622 Test ProtAnnot Subsystem - Windows

            • Major - Major loss of function.
            • Closed

              Activity

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              nfreese Nowlan Freese added a comment -

              Interproscan about page has changed to http://www.ebi.ac.uk/interpro/about/interpro/

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              nfreese Nowlan Freese added a comment - Interproscan about page has changed to http://www.ebi.ac.uk/interpro/about/interpro/
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              nfreese Nowlan Freese added a comment -

              Getting the following exception error/exception in both 9.1.4 and 9.1.6:

              16:36:51.913 ERROR o.l.i.p.i.InterProscanServiceRest - Server returned HTTP response code: 400 for URL: http://www.ebi.ac.uk/Tools/services/rest/iprscan5/run
              java.io.IOException: Server returned HTTP response code: 400 for URL: http://www.ebi.ac.uk/Tools/services/rest/iprscan5/run

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              nfreese Nowlan Freese added a comment - Getting the following exception error/exception in both 9.1.4 and 9.1.6: 16:36:51.913 ERROR o.l.i.p.i.InterProscanServiceRest - Server returned HTTP response code: 400 for URL: http://www.ebi.ac.uk/Tools/services/rest/iprscan5/run java.io.IOException: Server returned HTTP response code: 400 for URL: http://www.ebi.ac.uk/Tools/services/rest/iprscan5/run
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              nfreese Nowlan Freese added a comment -

              Tested on Fedora 27 GNOME 3.26.2

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              nfreese Nowlan Freese added a comment - Tested on Fedora 27 GNOME 3.26.2
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              nfreese Nowlan Freese added a comment -

              There seems to be an issue (present in 9.1.4 and 9.1.6) where interproscan skips gene models randomly. Running interproscan multiple times will yield variable results in terms of which and how many models return results. Some are marked as failing, while others do not appear to have been run at all.

              Show
              nfreese Nowlan Freese added a comment - There seems to be an issue (present in 9.1.4 and 9.1.6) where interproscan skips gene models randomly. Running interproscan multiple times will yield variable results in terms of which and how many models return results. Some are marked as failing, while others do not appear to have been run at all.
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              ssegu Sai Supreeth Segu (Inactive) added a comment -

              Unable to reproduce the error.

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              ssegu Sai Supreeth Segu (Inactive) added a comment - Unable to reproduce the error.
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              ssegu Sai Supreeth Segu (Inactive) added a comment -

              Everything looks good. Closing the ticket.

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              ssegu Sai Supreeth Segu (Inactive) added a comment - Everything looks good. Closing the ticket.
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              ssegu Sai Supreeth Segu (Inactive) added a comment -

              Had a conversion with Dr. Nowlan Freese, the issue was not replicated consistently. So I haven't labeled it as OldBug

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              ssegu Sai Supreeth Segu (Inactive) added a comment - Had a conversion with Dr. Nowlan Freese , the issue was not replicated consistently. So I haven't labeled it as OldBug

                People

                • Assignee:
                  nfreese Nowlan Freese
                  Reporter:
                  ann.loraine Ann Loraine
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                  Dates

                  • Created:
                    Updated:
                    Resolved: