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  1. IGB
  2. IGBF-2638

Test Operators - Annotation Tracks - Linux

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Attachments

            Issue Links

            relates to

            Task - A task that needs to be done. IGBF-2657 Investigate Find Junctions when deletion present

            • Major - Major loss of function.
            • To-Do

            Task - A task that needs to be done. IGBF-2636 Test Operators - Annotation Tracks - MacOS

            • Major - Major loss of function.
            • Closed

            Task - A task that needs to be done. IGBF-2637 Test Operators - Annotation Tracks - Windows

            • Major - Major loss of function.
            • Closed

              Activity

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              ann.loraine Ann Loraine created issue -
              ann.loraine Ann Loraine made changes -
              Field Original Value New Value
              Epic Link IGBF-2593 [ 18777 ]
              ann.loraine Ann Loraine made changes -
              Link This issue relates to IGBF-2637 [ IGBF-2637 ]
              ann.loraine Ann Loraine made changes -
              Link This issue relates to IGBF-2636 [ IGBF-2636 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              nfreese Nowlan Freese made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              nfreese Nowlan Freese made changes -
              Assignee Nowlan Freese [ nfreese ]
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              nfreese Nowlan Freese added a comment - - edited

              There is an issue observable when testing the Find Junctions and Find Junctions Tophat. In the example data on the left side there is an oddly shaped find junction with a value of 1. This is in fact not a "junction" but a deletion. However, following the introduction of soft-clips deletions are shown as breaks in the read, similar to a junction but coded differently in the cigar string. However, it appears that find junctions is counting deletions as junctions. This behavior will need to be corrected.

              Note that this issue is not specific to 9.1.6

              No other issues found.

              Tested on Linux Fedora 27 GNOME 3.26.2

              Show
              nfreese Nowlan Freese added a comment - - edited There is an issue observable when testing the Find Junctions and Find Junctions Tophat. In the example data on the left side there is an oddly shaped find junction with a value of 1. This is in fact not a "junction" but a deletion. However, following the introduction of soft-clips deletions are shown as breaks in the read, similar to a junction but coded differently in the cigar string. However, it appears that find junctions is counting deletions as junctions. This behavior will need to be corrected. Note that this issue is not specific to 9.1.6 No other issues found. Tested on Linux Fedora 27 GNOME 3.26.2
              nfreese Nowlan Freese made changes -
              Link This issue relates to IGBF-2657 [ IGBF-2657 ]
              nfreese Nowlan Freese made changes -
              Assignee Nowlan Freese [ nfreese ]
              nfreese Nowlan Freese made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              ann.loraine Ann Loraine made changes -
              Sprint Fall 5 Nov 9 - Nov 20 [ 108 ] Fall 5 Nov 9 - Nov 20, Fall 6 Nov 23 - Dec 4 [ 108, 109 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Assignee Sai Supreeth Segu [ ssegu ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Assignee Sai Supreeth Segu [ ssegu ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Assignee Sai Supreeth Segu [ ssegu ]
              Hide
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              ssegu Sai Supreeth Segu (Inactive) added a comment -

              Everything looks good. Moving to closed

              Show
              ssegu Sai Supreeth Segu (Inactive) added a comment - Everything looks good. Moving to closed
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Labels OldBug
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Assignee Sai Supreeth Segu [ ssegu ] Nowlan Freese [ nfreese ]

                People

                • Assignee:
                  nfreese Nowlan Freese
                  Reporter:
                  ann.loraine Ann Loraine
                • Votes:
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                  Watchers:
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                  Dates

                  • Created:
                    Updated:
                    Resolved: