Details
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Type: Task
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:0.25
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Epic Link:
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Sprint:Fall 5 Nov 9 - Nov 20, Fall 6 Nov 30 - Dec 11
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Issue Links
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Ann Loraine
created issue -
Ann Loraine
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Field | Original Value | New Value |
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Epic Link |
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Ann Loraine
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Ann Loraine
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Ann Loraine
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Rank | Ranked higher |
Nowlan Freese
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Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Nowlan Freese
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Assignee | Nowlan Freese [ nfreese ] |
Nowlan Freese
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Nowlan Freese
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Assignee | Nowlan Freese [ nfreese ] |
Nowlan Freese
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Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Ann Loraine
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Sprint | Fall 5 Nov 9 - Nov 20 [ 108 ] | Fall 5 Nov 9 - Nov 20, Fall 6 Nov 23 - Dec 4 [ 108, 109 ] |
Ann Loraine
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Rank | Ranked higher |
Sai Supreeth Segu (Inactive)
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Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Sai Supreeth Segu (Inactive)
made changes -
Assignee | Sai Supreeth Segu [ ssegu ] |
Sai Supreeth Segu (Inactive)
made changes -
Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
Sai Supreeth Segu (Inactive)
made changes -
Assignee | Sai Supreeth Segu [ ssegu ] |
Sai Supreeth Segu (Inactive)
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Sai Supreeth Segu (Inactive)
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Assignee | Sai Supreeth Segu [ ssegu ] |
Sai Supreeth Segu (Inactive)
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Labels | OldBug |
Sai Supreeth Segu (Inactive)
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Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Sai Supreeth Segu (Inactive)
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Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Sai Supreeth Segu (Inactive)
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Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Sai Supreeth Segu (Inactive)
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Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Sai Supreeth Segu (Inactive)
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Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Sai Supreeth Segu (Inactive)
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Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Sai Supreeth Segu (Inactive)
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Assignee | Sai Supreeth Segu [ ssegu ] | Nowlan Freese [ nfreese ] |
There is an issue observable when testing the Find Junctions and Find Junctions Tophat. In the example data on the left side there is an oddly shaped find junction with a value of 1. This is in fact not a "junction" but a deletion. However, following the introduction of soft-clips deletions are shown as breaks in the read, similar to a junction but coded differently in the cigar string. However, it appears that find junctions is counting deletions as junctions. This behavior will need to be corrected.
Note that this issue is not specific to 9.1.6
No other issues found.
Tested on Linux Fedora 27 GNOME 3.26.2