Test Track Operators - Graph Tracks - Linux
Fix instructions for testing graph track operations
Test Track Operators - Graph Tracks - MacOS
The graph for the following track operations are not same as the image in the wiki:
1) Inverse: Natural log: Even Numbers
2) Inverse: log3: Even Numbers
3) Inverse: Even Numbers
The images one the page for operations in which division by zero occurs are likely now to be out of date due to implementation of https://jira.transvar.org/browse/IGBF-1344 "graph operations don't handle inverse 0 well"
Does this address the above comment?
cc: Chirag Chandrahas Shetty and Nowlan Freese
The numbers for Inverse tracks tend to be very small. The y-axis needs to be adjusted for the view to match the image in the testing wiki. I tested on Linux, and it appears correctly once the y-axis has been adjusted.
IGB is not able to load some of the IGB quick-sites. It is same with 9.1.4.
15:48:50.996 INFO o.l.i.q.QuickloadDataProvider - Initializing Quickload Server http://lorainelab-quickload.scidas.org/quickload/
15:49:08.326 INFO o.l.i.q.QuickloadDataProvider - Initializing Quickload Server http://lorainelab-quickload.scidas.org/chipseq/
15:49:08.537 WARN o.l.i.quickload.util.QuickloadUtils - Optional quickload synonyms.txt file could not be loaded from http://lorainelab-quickload.scidas.org/chipseq/synonyms.txt
15:49:08.608 WARN o.l.i.quickload.util.QuickloadUtils - Optional species.txt could not be loaded from: http://lorainelab-quickload.scidas.org/chipseq/species.txt
15:49:26.477 INFO o.l.i.q.QuickloadDataProvider - Initializing Quickload Server http://lorainelab-quickload.scidas.org/rnaseq/
15:49:26.641 WARN o.l.i.quickload.util.QuickloadUtils - Optional quickload synonyms.txt file could not be loaded from http://lorainelab-quickload.scidas.org/rnaseq/synonyms.txt
15:49:26.714 WARN o.l.i.quickload.util.QuickloadUtils - Optional species.txt could not be loaded from: http://lorainelab-quickload.scidas.org/rnaseq/species.txt
Sorry for the confusion Chirag Chandrahas Shetty. These particular warnings are normal because these particular files are optional. A quickload site can contain them, but it is not mandatory that they do.
The values are not zero for The Single Track Operations - part 4 - inverse logs section the blue tracks are all essentially 0, or only trivially different from 0 (values like 9.536743E-7).
Instructions need to be updated to reflect above observations - see linked ticket. Also, we will be improving the usability for the interface in future efforts.