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  1. IGB
  2. IGBF-2640

Test Track Operators - Graph Tracks - Windows

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

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            relates to

            Task - A task that needs to be done. IGBF-2641 Test Track Operators - Graph Tracks - Linux

            • Major - Major loss of function.
            • Closed

            Task - A task that needs to be done. IGBF-2666 Fix instructions for testing graph track operations

            • Major - Major loss of function.
            • Closed

            Task - A task that needs to be done. IGBF-2639 Test Track Operators - Graph Tracks - MacOS

            • Major - Major loss of function.
            • Closed

              Activity

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              ann.loraine Ann Loraine created issue -
              ann.loraine Ann Loraine made changes -
              Field Original Value New Value
              Epic Link IGBF-2593 [ 18777 ]
              ann.loraine Ann Loraine made changes -
              Link This issue relates to IGBF-2639 [ IGBF-2639 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Link This issue relates to IGBF-2641 [ IGBF-2641 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              ssegu Sai Supreeth Segu (Inactive) made changes -
              Status In Progress [ 3 ] To-Do [ 10305 ]
              chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
              Assignee Chirag Chandrahas Shetty [ chirag24 ]
              chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
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              chirag24 Chirag Chandrahas Shetty (Inactive) added a comment - - edited

              The graph for the following track operations are not same as the image in the wiki:

              1) Inverse: Natural log: Even Numbers
              2) Inverse: log3: Even Numbers
              3) Inverse: Even Numbers

              Show
              chirag24 Chirag Chandrahas Shetty (Inactive) added a comment - - edited The graph for the following track operations are not same as the image in the wiki: 1) Inverse: Natural log: Even Numbers 2) Inverse: log3: Even Numbers 3) Inverse: Even Numbers
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              ann.loraine Ann Loraine added a comment -

              The images one the page for operations in which division by zero occurs are likely now to be out of date due to implementation of https://jira.transvar.org/browse/IGBF-1344 "graph operations don't handle inverse 0 well"

              Does this address the above comment?
              cc: Chirag Chandrahas Shetty and Nowlan Freese

              Show
              ann.loraine Ann Loraine added a comment - The images one the page for operations in which division by zero occurs are likely now to be out of date due to implementation of https://jira.transvar.org/browse/IGBF-1344 "graph operations don't handle inverse 0 well" Does this address the above comment? cc: Chirag Chandrahas Shetty and Nowlan Freese
              Hide
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              nfreese Nowlan Freese added a comment -

              The numbers for Inverse tracks tend to be very small. The y-axis needs to be adjusted for the view to match the image in the testing wiki. I tested on Linux, and it appears correctly once the y-axis has been adjusted.

              Show
              nfreese Nowlan Freese added a comment - The numbers for Inverse tracks tend to be very small. The y-axis needs to be adjusted for the view to match the image in the testing wiki. I tested on Linux, and it appears correctly once the y-axis has been adjusted.
              Hide
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              chirag24 Chirag Chandrahas Shetty (Inactive) added a comment -

              IGB is not able to load some of the IGB quick-sites. It is same with 9.1.4.

              Log:
              15:48:50.996 INFO o.l.i.q.QuickloadDataProvider - Initializing Quickload Server http://lorainelab-quickload.scidas.org/quickload/
              15:49:08.326 INFO o.l.i.q.QuickloadDataProvider - Initializing Quickload Server http://lorainelab-quickload.scidas.org/chipseq/
              15:49:08.537 WARN o.l.i.quickload.util.QuickloadUtils - Optional quickload synonyms.txt file could not be loaded from http://lorainelab-quickload.scidas.org/chipseq/synonyms.txt
              15:49:08.608 WARN o.l.i.quickload.util.QuickloadUtils - Optional species.txt could not be loaded from: http://lorainelab-quickload.scidas.org/chipseq/species.txt
              15:49:26.477 INFO o.l.i.q.QuickloadDataProvider - Initializing Quickload Server http://lorainelab-quickload.scidas.org/rnaseq/
              15:49:26.641 WARN o.l.i.quickload.util.QuickloadUtils - Optional quickload synonyms.txt file could not be loaded from http://lorainelab-quickload.scidas.org/rnaseq/synonyms.txt
              15:49:26.714 WARN o.l.i.quickload.util.QuickloadUtils - Optional species.txt could not be loaded from: http://lorainelab-quickload.scidas.org/rnaseq/species.txt

              Show
              chirag24 Chirag Chandrahas Shetty (Inactive) added a comment - IGB is not able to load some of the IGB quick-sites. It is same with 9.1.4. Log: 15:48:50.996 INFO o.l.i.q.QuickloadDataProvider - Initializing Quickload Server http://lorainelab-quickload.scidas.org/quickload/ 15:49:08.326 INFO o.l.i.q.QuickloadDataProvider - Initializing Quickload Server http://lorainelab-quickload.scidas.org/chipseq/ 15:49:08.537 WARN o.l.i.quickload.util.QuickloadUtils - Optional quickload synonyms.txt file could not be loaded from http://lorainelab-quickload.scidas.org/chipseq/synonyms.txt 15:49:08.608 WARN o.l.i.quickload.util.QuickloadUtils - Optional species.txt could not be loaded from: http://lorainelab-quickload.scidas.org/chipseq/species.txt 15:49:26.477 INFO o.l.i.q.QuickloadDataProvider - Initializing Quickload Server http://lorainelab-quickload.scidas.org/rnaseq/ 15:49:26.641 WARN o.l.i.quickload.util.QuickloadUtils - Optional quickload synonyms.txt file could not be loaded from http://lorainelab-quickload.scidas.org/rnaseq/synonyms.txt 15:49:26.714 WARN o.l.i.quickload.util.QuickloadUtils - Optional species.txt could not be loaded from: http://lorainelab-quickload.scidas.org/rnaseq/species.txt
              chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
              Status In Progress [ 3 ] To-Do [ 10305 ]
              chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
              Assignee Chirag Chandrahas Shetty [ chirag24 ]
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              ann.loraine Ann Loraine added a comment -

              Sorry for the confusion Chirag Chandrahas Shetty. These particular warnings are normal because these particular files are optional. A quickload site can contain them, but it is not mandatory that they do.

              Show
              ann.loraine Ann Loraine added a comment - Sorry for the confusion Chirag Chandrahas Shetty . These particular warnings are normal because these particular files are optional. A quickload site can contain them, but it is not mandatory that they do.
              chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
              Assignee Chirag Chandrahas Shetty [ chirag24 ]
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              chirag24 Chirag Chandrahas Shetty (Inactive) added a comment -

              The values are not zero for The Single Track Operations - part 4 - inverse logs section the blue tracks are all essentially 0, or only trivially different from 0 (values like 9.536743E-7).

              Show
              chirag24 Chirag Chandrahas Shetty (Inactive) added a comment - The values are not zero for The Single Track Operations - part 4 - inverse logs section the blue tracks are all essentially 0, or only trivially different from 0 (values like 9.536743E-7).
              chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
              Assignee Chirag Chandrahas Shetty [ chirag24 ]
              chirag24 Chirag Chandrahas Shetty (Inactive) made changes -
              Labels OldBug
              ann.loraine Ann Loraine made changes -
              Sprint Fall 5 Nov 9 - Nov 20 [ 108 ] Fall 5 Nov 9 - Nov 20, Fall 6 Nov 23 - Dec 4 [ 108, 109 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]
              ann.loraine Ann Loraine made changes -
              Link This issue relates to IGBF-2666 [ IGBF-2666 ]
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              ann.loraine Ann Loraine added a comment -

              Instructions need to be updated to reflect above observations - see linked ticket. Also, we will be improving the usability for the interface in future efforts.

              Show
              ann.loraine Ann Loraine added a comment - Instructions need to be updated to reflect above observations - see linked ticket. Also, we will be improving the usability for the interface in future efforts.
              ann.loraine Ann Loraine made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              ann.loraine Ann Loraine made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              ann.loraine Ann Loraine made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              ann.loraine Ann Loraine made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              ann.loraine Ann Loraine made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              ann.loraine Ann Loraine made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ] Sai Supreeth Segu [ ssegu ]
              rweidenh Logan Weidenhammer (Inactive) made changes -
              Assignee Sai Supreeth Segu [ ssegu ] Chirag Chandrahas Shetty [ chirag24 ]

                People

                • Assignee:
                  chirag24 Chirag Chandrahas Shetty (Inactive)
                  Reporter:
                  ann.loraine Ann Loraine
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  3 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: