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  1. IGB
  2. IGBF-2660

Create curated categories and descriptions & Update UI to use Curated Categories

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None
    • Story Points:
      3
    • Sprint:
      Fall 5 Nov 9 - Nov 20, Fall 6 Nov 30 - Dec 11, Fall 7 Dec 14 - Dec 23

      Attachments

        Activity

        Hide
        aloraine Ann Loraine added a comment - - edited
        • App type - How an App changes the IGB interface

        Application - Application Apps add new windows to the IGB Interface
        Plugin - Plugin Apps add new menus to the IGB interface
        Panel - Panel Apps introduced a new tabbed panel to the IGB interface

        • Biology - Apps categorized by biological research area

        Epigenome - Apps for visualizing or searching DNA or histone modification diversity
        Alternative splicing - Apps that show splicing pattern diversity
        Microbial genomics - Apps for analysis and visualization of microbial genomic data
        Plant genomics - Apps for analysis and visualization of genomes from photosynthetic organisms
        Protein - Apps for searching or visualizing of protein structure or function
        Transcriptome - Apps that display RNA expression data

        • Data - Apps categorized by data formats and data types

        Bisulfite - Apps that display DNA from bisulfite sequencing to detect DNA methylation
        ChIP-Seq - Apps that display DNA sequenced from chromatin precipitation experiments
        DNA-Seq - Apps that display genomic DNA sequencing results
        RNA-Seq - Apps that display RNA sequence alignments, coverage graphs, and related data

        Show
        aloraine Ann Loraine added a comment - - edited App type - How an App changes the IGB interface Application - Application Apps add new windows to the IGB Interface Plugin - Plugin Apps add new menus to the IGB interface Panel - Panel Apps introduced a new tabbed panel to the IGB interface Biology - Apps categorized by biological research area Epigenome - Apps for visualizing or searching DNA or histone modification diversity Alternative splicing - Apps that show splicing pattern diversity Microbial genomics - Apps for analysis and visualization of microbial genomic data Plant genomics - Apps for analysis and visualization of genomes from photosynthetic organisms Protein - Apps for searching or visualizing of protein structure or function Transcriptome - Apps that display RNA expression data Data - Apps categorized by data formats and data types Bisulfite - Apps that display DNA from bisulfite sequencing to detect DNA methylation ChIP-Seq - Apps that display DNA sequenced from chromatin precipitation experiments DNA-Seq - Apps that display genomic DNA sequencing results RNA-Seq - Apps that display RNA sequence alignments, coverage graphs, and related data
        Hide
        sameer Sameer Shanbhag (Inactive) added a comment -

        Hi Professor,

        I have submitted the pull request for this ticket.

        Tasks Completed:

        • Added Description to Curated Categories
        • Added the above mentioned Categories and Subcategories.
        • Added logic to use these categories and and subcategory description to add to the UI
        • Cleaning the CSS which was not required for current update

        Pull Request:

        c.c. Ann Loraine

        Show
        sameer Sameer Shanbhag (Inactive) added a comment - Hi Professor, I have submitted the pull request for this ticket. Tasks Completed: Added Description to Curated Categories Added the above mentioned Categories and Subcategories. Added logic to use these categories and and subcategory description to add to the UI Cleaning the CSS which was not required for current update Pull Request: https://bitbucket.org/lorainelab/appstore/pull-requests/230/igbf-2660-add-curated-categories-and c.c. Ann Loraine
        Hide
        aloraine Ann Loraine added a comment -

        Merged. Not yet deployed on devappstore5.bioviz.org.

        Show
        aloraine Ann Loraine added a comment - Merged. Not yet deployed on devappstore5.bioviz.org.
        Hide
        ssegu Sai Supreeth Segu added a comment -

        Changes are reflected in devappstore5.bioviz.org and everything looks good. Closing the ticket.

        Show
        ssegu Sai Supreeth Segu added a comment - Changes are reflected in devappstore5.bioviz.org and everything looks good. Closing the ticket.
        Hide
        aloraine Ann Loraine added a comment -

        Add "Panel" to curated categories. See listing above.

        Show
        aloraine Ann Loraine added a comment - Add "Panel" to curated categories. See listing above.
        Show
        chirag24 Chirag Chandrahas Shetty added a comment - Diff: https://bitbucket.org/chirag06/appstore/commits/57f9674c91d024c4149ffb1fd2cd0d0843339f13
        Hide
        aloraine Ann Loraine added a comment -

        Merged and deployed to https://devappstore5.bioviz.org.
        Note that I did not first delete the database & s3 bucket. So testing should include checking that the new "panel" category is properly shown.

        Show
        aloraine Ann Loraine added a comment - Merged and deployed to https://devappstore5.bioviz.org . Note that I did not first delete the database & s3 bucket. So testing should include checking that the new "panel" category is properly shown.
        Hide
        ssegu Sai Supreeth Segu added a comment -

        Everything looks good and changes are reflected in https://devappstore5.bioviz.org. Apologies for missing "panel" category when I first checked it. Thanks for Sameer Shanbhag for noticing the issue. Now I have make sure that all the sub-categories are present in each category. Moving the ticket to closed.

        Show
        ssegu Sai Supreeth Segu added a comment - Everything looks good and changes are reflected in https://devappstore5.bioviz.org . Apologies for missing "panel" category when I first checked it. Thanks for Sameer Shanbhag for noticing the issue. Now I have make sure that all the sub-categories are present in each category. Moving the ticket to closed.

          People

          • Assignee:
            sameer Sameer Shanbhag (Inactive)
            Reporter:
            aloraine Ann Loraine
          • Votes:
            0 Vote for this issue
            Watchers:
            4 Start watching this issue

            Dates

            • Created:
              Updated:
              Resolved: