[IGBF-2696] Add blacklist regions to IGB quickload for mouse, human, fruit fly - JIRA UNCC

Details

Story Points:
1.5
Epic Link:
Improve IGB for users
Sprint:
Fall 7 Dec 14 - Dec 23, Winter 1 Dec 28 - Jan 8, Winter 2 Jan 11 - Jan 22, Winter 3 Jan 25 - Feb 5, Winter 4 Feb 8 - Feb 19, Winter 5 Feb 22 - Mar 5, Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9, Summer 3 2021 Jul 12 - Jul 23, Summer 4 2021 Aug 2 - Aug 13, Fall 1 2021 Aug 16 - Aug 27, Fall 2 2021 Aug 30 - Sep10, Fall 3 2021 Sep 13 - Sep 24

"blacklist" genes are genes or regions in a genome that give bizarre results in sequence-based assays.

Let's include these in IGB.

This github repo directory contains bed files with blacklisted regions:

References:

Visualizations:

relates to

IGBF-2955 Update SciDas and IGB Quickload for blacklist

IGBF-2952 Add UCSC dm6 fruit fly genome and annotation to IGB

IGBF-1217 add Genome in a Bottle data sets to IGB Quickload