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  1. IGB
  2. IGBF-2737

Test Quickload Saver App on Windows, Mac and Linux

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Description

      This task focuses on testing the newest version of the Quickload Saver app, which lets a user save out a quickload site for the genome version they are currently viewing in IGB.

      The IGB Quickload Saver App repository is here: https://bitbucket.org/lorainelab/quickload-saver/src/master/

      To test the App:

      • Install the App from the "downloads" section of the app repository (see bitbucket pipelines documentation for App Store)
      • Open the most recent Arabidopsis genome version (June 2009) in IGB because it has the highest number of data files available for visualization out of all the different genomes we have
      • Select a data set and change its color and other properties (make a note of what you did)
      • Save a quickload site for this genome
      • Reset IGB to default settings (this also quits IGB) - IMPORTANT

      Restart IGB and then:

      • De-activate off all the quickload sites (to avoid confusing existing quickload site data with the saved quickload site you are testing)
      • Add the newly saved quickload site to the list of available quickload sites
      • Open the Arabidopsis genome
      • Check that you can load data files
      • Check that when you load the data file you loaded before, it uses the same colors and properties you selected before

      Also perform other exploratory testing once you have an idea of what the App is doing.

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            Hide
            nfreese Nowlan Freese added a comment - - edited

            The Quickload Saver test documentation can be found here: https://wiki.transvar.org/display/ITD/Quickload+Saver

            Show
            nfreese Nowlan Freese added a comment - - edited The Quickload Saver test documentation can be found here: https://wiki.transvar.org/display/ITD/Quickload+Saver
            Hide
            nfreese Nowlan Freese added a comment -

            Note that until the changes to IGBF-510 are merged into master the instructions for loading the sequence will not work correctly.

            Show
            nfreese Nowlan Freese added a comment - Note that until the changes to IGBF-510 are merged into master the instructions for loading the sequence will not work correctly.
            Hide
            nfreese Nowlan Freese added a comment -

            IGBF-510 changes have been merged.

            To test follow the instructions here: https://wiki.transvar.org/display/ITD/Quickload+Saver

            Show
            nfreese Nowlan Freese added a comment - IGBF-510 changes have been merged. To test follow the instructions here: https://wiki.transvar.org/display/ITD/Quickload+Saver
            Hide
            rweidenh Logan Weidenhammer (Inactive) added a comment - - edited

            When doing the section:

            Select File > Open Genome from File...
            In the Open Genome from File window:
            Reference Sequence: Click Choose File... and select E_unicornis_Jul_2043.2bit
            Genome Version: E_unicornis_Jul_2043
            Species: Equus unicornis
            Click OK

            The data will not load. The sequence does appear to load.
            image attached above, to this issue.

            Nevermind, I didn't realize that the data wasn't meant to load at this point. It does load after adding the bed file.

            Show
            rweidenh Logan Weidenhammer (Inactive) added a comment - - edited When doing the section: Select File > Open Genome from File... In the Open Genome from File window: Reference Sequence: Click Choose File... and select E_unicornis_Jul_2043.2bit Genome Version: E_unicornis_Jul_2043 Species: Equus unicornis Click OK The data will not load. The sequence does appear to load. image attached above, to this issue. Nevermind, I didn't realize that the data wasn't meant to load at this point. It does load after adding the bed file.
            Hide
            rweidenh Logan Weidenhammer (Inactive) added a comment - - edited

            Tested by following the instructions here: https://wiki.bioviz.org/confluence/display/ITD/Quickload+Saver
            The Quickload Saver app works perfectly. The creation of local quickload files by the app is working. Loading those files brings the data back up exactly as it was saved.

            Recommending pull request.

            Show
            rweidenh Logan Weidenhammer (Inactive) added a comment - - edited Tested by following the instructions here: https://wiki.bioviz.org/confluence/display/ITD/Quickload+Saver The Quickload Saver app works perfectly. The creation of local quickload files by the app is working. Loading those files brings the data back up exactly as it was saved. Recommending pull request.

              People

              • Assignee:
                nfreese Nowlan Freese
                Reporter:
                ann.loraine Ann Loraine
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                • Created:
                  Updated:
                  Resolved: