Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.5
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Epic Link:
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Sprint:Winter 6 Mar 8 - Mar 19
Description
This task focuses on testing the newest version of the Quickload Saver app, which lets a user save out a quickload site for the genome version they are currently viewing in IGB.
The IGB Quickload Saver App repository is here: https://bitbucket.org/lorainelab/quickload-saver/src/master/
To test the App:
- Install the App from the "downloads" section of the app repository (see bitbucket pipelines documentation for App Store)
- Open the most recent Arabidopsis genome version (June 2009) in IGB because it has the highest number of data files available for visualization out of all the different genomes we have
- Select a data set and change its color and other properties (make a note of what you did)
- Save a quickload site for this genome
- Reset IGB to default settings (this also quits IGB) - IMPORTANT
Restart IGB and then:
- De-activate off all the quickload sites (to avoid confusing existing quickload site data with the saved quickload site you are testing)
- Add the newly saved quickload site to the list of available quickload sites
- Open the Arabidopsis genome
- Check that you can load data files
- Check that when you load the data file you loaded before, it uses the same colors and properties you selected before
Also perform other exploratory testing once you have an idea of what the App is doing.
Attachments
Issue Links
- relates to
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IGBF-510 Create Quickload Saver IGB app
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Description |
This task focuses on testing the newest version of the IGB Quickload app, which lets a user save out a quickload site for the genome version they are currently viewing in IGB.
Please see https://jira.transvar.org/browse/IGBF-510 for links to the App repository. * Review the comments on the ticket to understand the development history. * Then please read the code to understand what it is doing. * Then test the functionality. To test the App: * Install the App from the "downloads" section of the app repository (see bitbucket pipelines documentation for App Store) * Open the Arabidopsis genome in IGB because it has the most number of data files available for visualization out of all the different genomes we have * Select a data set and change its color and other properties (make a note of what you did) * Save a quickload site for the genome * Reset IGB to default settings (this also quits IGB) - IMPORTANT Restart IGB and then: * De-activate off all the quickload sites (to avoid confusing existing quickload site data with the saved quickload site you are testing) * Add the newly saved quickload site to the list of available quickload sites * Open the Arabidopsis genome * Check that you can load data files * Check that when you load the data file you loaded before, it uses the same colors and properties you selected before Also perform other exploratory testing once you have an idea of what the App is doing. |
This task focuses on testing the newest version of the IGB Quickload app, which lets a user save out a quickload site for the genome version they are currently viewing in IGB.
Please see https://jira.transvar.org/browse/IGBF-510 for links to the App repository. * Review the comments on the ticket to understand the development history. * Then please read the code to understand what it is doing. * Then test the functionality. To test the App: * Install the App from the "downloads" section of the app repository (see bitbucket pipelines documentation for App Store) * Open the Arabidopsis genome in IGB because it has the most number of data files available for visualization out of all the different genomes we have * Select a data set and change its color and other properties (make a note of what you did) * Save a quickload site for the genome * Reset IGB to default settings (this also quits IGB) - IMPORTANT Restart IGB and then: * De-activate off all the quickload sites (to avoid confusing existing quickload site data with the saved quickload site you are testing) * Add the newly saved quickload site to the list of available quickload sites * Open the Arabidopsis genome * Check that you can load data files * Check that when you load the data file you loaded before, it uses the same colors and properties you selected before Also perform other exploratory testing once you have an idea of what the App is doing. |
| Summary | Try out latest version of Quickload App | Test latest version of Quickload App |
| Description |
This task focuses on testing the newest version of the IGB Quickload app, which lets a user save out a quickload site for the genome version they are currently viewing in IGB.
Please see https://jira.transvar.org/browse/IGBF-510 for links to the App repository. * Review the comments on the ticket to understand the development history. * Then please read the code to understand what it is doing. * Then test the functionality. To test the App: * Install the App from the "downloads" section of the app repository (see bitbucket pipelines documentation for App Store) * Open the Arabidopsis genome in IGB because it has the most number of data files available for visualization out of all the different genomes we have * Select a data set and change its color and other properties (make a note of what you did) * Save a quickload site for the genome * Reset IGB to default settings (this also quits IGB) - IMPORTANT Restart IGB and then: * De-activate off all the quickload sites (to avoid confusing existing quickload site data with the saved quickload site you are testing) * Add the newly saved quickload site to the list of available quickload sites * Open the Arabidopsis genome * Check that you can load data files * Check that when you load the data file you loaded before, it uses the same colors and properties you selected before Also perform other exploratory testing once you have an idea of what the App is doing. |
This task focuses on testing the newest version of the Quickload Saver app, which lets a user save out a quickload site for the genome version they are currently viewing in IGB.
The IGB Quickload Saver App repository is here: https://bitbucket.org/lorainelab/quickload-saver/src/master/ * Review the comments on the ticket * Then please read the code to understand what it is doing. * Then test the functionality. To test the App: * Install the App from the "downloads" section of the app repository (see bitbucket pipelines documentation for App Store) * Open the most recent Arabidopsis genome version (June 2009) in IGB because it has the highest number of data files available for visualization out of all the different genomes we have * Select a data set and change its color and other properties (make a note of what you did) * Save a quickload site for this genome * Reset IGB to default settings (this also quits IGB) - *IMPORTANT* Restart IGB and then: * De-activate off all the quickload sites (to avoid confusing existing quickload site data with the saved quickload site you are testing) * Add the newly saved quickload site to the list of available quickload sites * Open the Arabidopsis genome * Check that you can load data files * Check that when you load the data file you loaded before, it uses the same colors and properties you selected before Also perform other exploratory testing once you have an idea of what the App is doing. |
| Rank | Ranked higher |
| Sprint | Winter 6 Mar 8 - Mar 19 [ 116 ] |
| Description |
This task focuses on testing the newest version of the Quickload Saver app, which lets a user save out a quickload site for the genome version they are currently viewing in IGB.
The IGB Quickload Saver App repository is here: https://bitbucket.org/lorainelab/quickload-saver/src/master/ * Review the comments on the ticket * Then please read the code to understand what it is doing. * Then test the functionality. To test the App: * Install the App from the "downloads" section of the app repository (see bitbucket pipelines documentation for App Store) * Open the most recent Arabidopsis genome version (June 2009) in IGB because it has the highest number of data files available for visualization out of all the different genomes we have * Select a data set and change its color and other properties (make a note of what you did) * Save a quickload site for this genome * Reset IGB to default settings (this also quits IGB) - *IMPORTANT* Restart IGB and then: * De-activate off all the quickload sites (to avoid confusing existing quickload site data with the saved quickload site you are testing) * Add the newly saved quickload site to the list of available quickload sites * Open the Arabidopsis genome * Check that you can load data files * Check that when you load the data file you loaded before, it uses the same colors and properties you selected before Also perform other exploratory testing once you have an idea of what the App is doing. |
This task focuses on testing the newest version of the Quickload Saver app, which lets a user save out a quickload site for the genome version they are currently viewing in IGB.
The IGB Quickload Saver App repository is here: https://bitbucket.org/lorainelab/quickload-saver/src/master/ To test the App: * Install the App from the "downloads" section of the app repository (see bitbucket pipelines documentation for App Store) * Open the most recent Arabidopsis genome version (June 2009) in IGB because it has the highest number of data files available for visualization out of all the different genomes we have * Select a data set and change its color and other properties (make a note of what you did) * Save a quickload site for this genome * Reset IGB to default settings (this also quits IGB) - *IMPORTANT* Restart IGB and then: * De-activate off all the quickload sites (to avoid confusing existing quickload site data with the saved quickload site you are testing) * Add the newly saved quickload site to the list of available quickload sites * Open the Arabidopsis genome * Check that you can load data files * Check that when you load the data file you loaded before, it uses the same colors and properties you selected before Also perform other exploratory testing once you have an idea of what the App is doing. |
| Epic Link | IGBF-1765 [ 17855 ] |
| Summary | Test latest version of Quickload App | Test latest version of Quickload Saver App |
| Rank | Ranked lower |
| Summary | Test latest version of Quickload Saver App | Test Quickload Saver App on Windows, Mac and Linux |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Note that until the changes to IGBF-510 are merged into master the instructions for loading the sequence will not work correctly.
| Assignee | Nowlan Freese [ nfreese ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Ann Loraine [ aloraine ] | Nowlan Freese [ nfreese ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Comment | [ The code looks good to me, so far as my tiny brain can tell. Please submit a PR when ready. ] |
IGBF-510 changes have been merged.
To test follow the instructions here: https://wiki.transvar.org/display/ITD/Quickload+Saver
| Assignee | Rachel Weidenhammer [ rweidenh ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
When doing the section:
Select File > Open Genome from File...
In the Open Genome from File window:
Reference Sequence: Click Choose File... and select E_unicornis_Jul_2043.2bit
Genome Version: E_unicornis_Jul_2043
Species: Equus unicornis
Click OK
The data will not load. The sequence does appear to load.
image attached above, to this issue.
Nevermind, I didn't realize that the data wasn't meant to load at this point. It does load after adding the bed file.
| Attachment | NotLoadingData-OpenGenomeFromFile-E_unicornis_Jul_2043.png [ 15504 ] |
| Attachment | NotLoadingData-OpenGenomeFromFile-E_unicornis_Jul_2043.png [ 15504 ] |
Tested by following the instructions here: https://wiki.bioviz.org/confluence/display/ITD/Quickload+Saver
The Quickload Saver app works perfectly. The creation of local quickload files by the app is working. Loading those files brings the data back up exactly as it was saved.
Recommending pull request.
| Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Rachel Weidenhammer [ rweidenh ] | Nowlan Freese [ nfreese ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
The Quickload Saver test documentation can be found here: https://wiki.transvar.org/display/ITD/Quickload+Saver