Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 9.1.8 Major Release
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Winter 4 Feb 8 - Feb 19, Winter 5 Feb 22 - Mar 5
Description
Situation: The External View tab does not appear to be working in IGB release 9.1.6 or 9.1.8:
External View for UCSC is working as recently as 9.1.4. This issue may be related to changes to DAS (IGBF-2473 and IGBF-2474).
External View for Ensembl does not appear to be working in 9.1.4.
Task: Fix the External View tab.
To reproduce the issue:
Open IGB.
Select the mouse genome (M_musculus_Dec_2011).
Navigate to chr1:87,262,042-87,313,112
Select the External View tab.
Select UCSC
Click update
If working, UCSC gene models will appear.
If not working, the following statement will be present: "An external view is not available for this genome. If you have questions, please contact the IGB team."
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1765 [ 17855 ] |
| Link | This issue relates to HELP-374 [ HELP-374 ] |
| Description |
Situation: The [External View|https://wiki.transvar.org/display/igbman/External+View] tab does not appear to be working in IGB release 9.1.6 or 9.1.8:
External View for UCSC is working as recently as 9.1.4. This issue may be related to changes to DAS ( External View for Ensembl does not appear to be working in 9.1.4. Task: Fix the External View tab. To reproduce the issue: Open IGB. Select the mouse genome. Navigate to chr1:87,262,042-87,313,112 Select the External View tab. Select UCSC Click update If working, UCSC gene models will appear. If not working, the following statement will be present: "An external view is not available for this genome. If you have questions, please contact the IGB team." |
Situation: The [External View|https://wiki.transvar.org/display/igbman/External+View] tab does not appear to be working in IGB release 9.1.6 or 9.1.8:
External View for UCSC is working as recently as 9.1.4. This issue may be related to changes to DAS ( External View for Ensembl does not appear to be working in 9.1.4. Task: Fix the External View tab. To reproduce the issue: Open IGB. Select the mouse genome (M_musculus_Dec_2011). Navigate to chr1:87,262,042-87,313,112 Select the External View tab. Select UCSC Click update If working, UCSC gene models will appear. If not working, the following statement will be present: "An external view is not available for this genome. If you have questions, please contact the IGB team." |
| Assignee | Nowlan Freese [ nfreese ] |
| Sprint | Winter 4 Feb 8 - Feb 19 [ 114 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Winter 4 Feb 8 - Feb 19 [ 114 ] | Winter 4 Feb 8 - Feb 19, Winter 5 Feb 22 - Mar 5 [ 114, 115 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Fix Version/s | 9.1.8 Major Release [ 10605 ] |
| Status | To-Do [ 10305 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |