Details
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Type: Task
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 9.1.8 Major Release
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28
Description
If the UCSC Distributed Annotation Service (DAS) data source is not active (see Preferences > Data Sources) then External View does not work. It shows a message stating that the genome is not available.
This message is very cryptic because it does not explain to the user that they need to activate the UCSC DAS data source in order to show data in the External View tab.
Investigate: Can we simply add a button or other user interface component that would let the user activate the required data source within the External View tab?
Attachments
Issue Links
- blocks
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IGBF-2863 Use UCSC JSON endpoint to get list of genomes for External View tab
- Closed
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IGBF-2864 Improve External View error message displayed when no genome is selected
- Closed
- relates to
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IGBF-2860 Disable Ensembl external view
- Closed
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IGBF-2869 Investigate adding UCSC JSON API as a new data provider
- Closed
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IGBF-2858 Write R or python notebook to compare data retrieved from UCSC DAS and JSON APIs
- To-Do
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IGBF-2793 Restore DASv1 support
- Closed
We have successfully investigated the problem and planned a solution. Closing the ticket.